ENSGALG00000008372


Gallus gallus

Features
Gene ID: ENSGALG00000008372
  
Biological name :XRN2
  
Synonyms : 5-3 exoribonuclease 2 / Q5ZIP4 / XRN2
  
Possible biological names infered from orthology : Q9DBR1 / Q9H0D6
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 3546757
Gene end: 3591893
  
Corresponding Affymetrix probe sets: GgaAffx.12843.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013622
NCBI entrez gene - 421236     See in Manteia.
RefSeq - NM_001031033
RefSeq Peptide - NP_001026204
swissprot - Q5ZIP4
Ensembl - ENSGALG00000008372
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 xrn2ENSDARG00000101900Danio rerio
 XRN2ENSG00000088930Homo sapiens
 Xrn2ENSMUSG00000027433Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004859  Putative 5-3 exonuclease
 IPR017151  5"-3" exoribonuclease type 2
 IPR027073  5"-3" exoribonuclease


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000738 DNA catabolic process, exonucleolytic IEA
 biological_processGO:0006139 nucleobase-containing compound metabolic process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006353 DNA-templated transcription, termination IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0016070 RNA metabolic process IEA
 biological_processGO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0016235 aggresome IEA
 molecular_functionGO:0001147 transcription termination site sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004527 exonuclease activity IEA
 molecular_functionGO:0004534 5"-3" exoribonuclease activity IEA
 molecular_functionGO:0008409 5"-3" exonuclease activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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