ENSDARG00000102180


Danio rerio

Features
Gene ID: ENSDARG00000102180
  
Biological name :shroom3
  
Synonyms : shroom3 / shroom family member 3
  
Possible biological names infered from orthology : Q8TF72
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 5635420
Gene end: 5781802
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132344
Ensembl peptide - ENSDARP00000139006
swissprot - A0A0R4IET4
swissprot - A0A0R4IS11
ZFIN ID - ZDB-GENE-120817-1
Ensembl - ENSDARG00000102180
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000042427Gallus gallus
 Q8TF72ENSG00000138771Homo sapiens
 Shroom3ENSMUSG00000029381Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01080074.1 / Q13796* / SHROOM2* / shroom family member 2*ENSDARG0000007637117
shroom1 / shroom family member 1 / Q2M3G4* / Q5SX79*ENSDARG0000009418114
shroom4 / shroom family member 4ENSDARG000000799003
shroom2a / shroom family member 2a / Q13796* / SHROOM2* / shroom family member 2*ENSDARG000000764161


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR014799  Apx/Shrm Domain 2
 IPR014800  Apx/Shrm Domain 1
 IPR027685  Shroom family
 IPR030494  Shroom3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0001843 neural tube closure IEA
 biological_processGO:0002064 epithelial cell development IEA
 biological_processGO:0048919 posterior lateral line neuromast development IMP
 biological_processGO:0072015 glomerular visceral epithelial cell development IMP
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0051015 actin filament binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005227 protoneuromast protoneuromast disorganized , abnormal
protoneuromast decreased amount , abnormal
protoneuromast extracellular region absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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