ENSDARG00000102317


Danio rerio

Features
Gene ID: ENSDARG00000102317
  
Biological name :rpl26
  
Synonyms : ribosomal protein L26 / rpl26
  
Possible biological names infered from orthology : 60S ribosomal protein L26 / AC135178.2 / P61254 / P61255 / Q9UNX3 / ribosomal protein L26 like 1 / RPL26L1
  
Species: Danio rerio
  
Chr. number: 14
Strand: 1
Band:
Gene start: 52563794
Gene end: 52568371
  
Corresponding Affymetrix probe sets: Dr.25291.5.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130503
NCBI entrez gene - 406387     See in Manteia.
swissprot - Q7SXA1
ZFIN ID - ZDB-GENE-040426-2117
Ensembl - ENSDARG00000102317
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL26L1ENSGALG00000002868Gallus gallus
 AC135178.2ENSG00000263809Homo sapiens
 Q9UNX3ENSG00000037241Homo sapiens
 RPL26ENSG00000161970Homo sapiens
 Rpl26ENSMUSG00000060938Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005756  Ribosomal protein L26/L24, eukaryotic/archaeal
 IPR005824  KOW
 IPR005825  Ribosomal protein L24/L26, conserved site
 IPR008991  Translation protein SH3-like domain superfamily
 IPR014722  Ribosomal protein L2, domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0042273 ribosomal large subunit biogenesis IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0015934 large ribosomal subunit IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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