ENSDARG00000102333


Danio rerio

Features
Gene ID: ENSDARG00000102333
  
Biological name :fcf1
  
Synonyms : fcf1 / FCF1 rRNA-processing protein
  
Possible biological names infered from orthology : Q9CTH6 / Q9Y324 / rRNA-processing
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 49457158
Gene end: 49481672
  
Corresponding Affymetrix probe sets: Dr.1085.1.S1_at (Zebrafish Array)   Dr.1085.2.A1_at (Zebrafish Array)   NM_001017601_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000130801
NCBI entrez gene - 550264     See in Manteia.
RefSeq - NM_001017601
RefSeq Peptide - NP_001017601
swissprot - A0A0G2KES8
swissprot - Q568H9
ZFIN ID - ZDB-GENE-050417-67
Ensembl - ENSDARG00000102333
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FCF1ENSGALG00000010275Gallus gallus
 FCF1ENSG00000119616Homo sapiens
 Fcf1ENSMUSG00000021243Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR006984  rRNA-processing protein Fcf1/Utp23
 IPR029060  PIN-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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