ENSG00000119616


Homo sapiens

Features
Gene ID: ENSG00000119616
  
Biological name :FCF1
  
Synonyms : FCF1 / FCF1, rRNA-processing protein / Q9Y324
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q24.3
Gene start: 74713144
Gene end: 74738620
  
Corresponding Affymetrix probe sets: 212499_s_at (Human Genome U133 Plus 2.0 Array)   215567_at (Human Genome U133 Plus 2.0 Array)   219927_at (Human Genome U133 Plus 2.0 Array)   240928_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452497
Ensembl peptide - ENSP00000344393
Ensembl peptide - ENSP00000444939
Ensembl peptide - ENSP00000450750
Ensembl peptide - ENSP00000451345
Ensembl peptide - ENSP00000452297
Ensembl peptide - ENSP00000452415
NCBI entrez gene - 51077     See in Manteia.
RefSeq - XM_011536816
RefSeq - NM_001318508
RefSeq - NM_015962
RefSeq - XM_005267730
RefSeq - XM_011536815
RefSeq Peptide - NP_057046
RefSeq Peptide - NP_001305437
swissprot - G3V1S4
swissprot - Q4FZ45
swissprot - G3V2M5
swissprot - G3V3N8
swissprot - G3V5D2
swissprot - G3V5S9
swissprot - G3V5L8
swissprot - Q9Y324
Ensembl - ENSG00000119616
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fcf1ENSDARG00000102333Danio rerio
 FCF1ENSGALG00000010275Gallus gallus
 Fcf1ENSMUSG00000021243Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR006984  rRNA-processing protein Fcf1/Utp23
 IPR029060  PIN-like domain superfamily
 IPR037503  rRNA-processing protein Fcf1, PIN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IEA
 molecular_functionGO:0003723 RNA binding HDA


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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