ENSMUSG00000021243


Mus musculus

Features
Gene ID: ENSMUSG00000021243
  
Biological name :Fcf1
  
Synonyms : Fcf1 / Q9CTH6 / rRNA-processing
  
Possible biological names infered from orthology : FCF1, rRNA-processing protein / Q9Y324
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: D1
Gene start: 84970897
Gene end: 84983303
  
Corresponding Affymetrix probe sets: 10397277 (MoGene1.0st)   1452795_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000131190
Ensembl peptide - ENSMUSP00000021669
NCBI entrez gene - 73736     See in Manteia.
MGI - MGI:1920986
RefSeq - NM_028632
RefSeq Peptide - NP_082908
swissprot - E9Q186
swissprot - Q9CTH6
Ensembl - ENSMUSG00000021243
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fcf1ENSDARG00000102333Danio rerio
 FCF1ENSGALG00000010275Gallus gallus
 FCF1ENSG00000119616Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR006984  rRNA-processing protein Fcf1/Utp23
 IPR029060  PIN-like domain superfamily
 IPR037503  rRNA-processing protein Fcf1, PIN domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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