ENSGALG00000010275


Gallus gallus

Features
Gene ID: ENSGALG00000010275
  
Biological name :FCF1
  
Synonyms : FCF1 / FCF1, rRNA-processing protein
  
Possible biological names infered from orthology : Q9CTH6 / Q9Y324 / rRNA-processing
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 38071615
Gene end: 38076090
  
Corresponding Affymetrix probe sets: Gga.8803.1.S1_at (Chicken Array)   Gga.8803.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000059357
Ensembl peptide - ENSGALP00000016691
Ensembl peptide - ENSGALP00000062436
NCBI entrez gene - 423355     See in Manteia.
RefSeq - XM_421270
swissprot - A0A1L1RUD3
swissprot - F1N963
Ensembl - ENSGALG00000010275
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 fcf1ENSDARG00000102333Danio rerio
 FCF1ENSG00000119616Homo sapiens
 Fcf1ENSMUSG00000021243Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002716  PIN domain
 IPR006984  rRNA-processing protein Fcf1/Utp23
 IPR029060  PIN-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0000480 endonucleolytic cleavage in 5"-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0032040 small-subunit processome IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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