ENSDARG00000102590


Danio rerio

Features
Gene ID: ENSDARG00000102590
  
Biological name :polr3h
  
Synonyms : polr3h / polymerase (RNA) III (DNA directed) polypeptide H
  
Possible biological names infered from orthology : DNA-directed RNA polymerase III subunit RPC8 / Q9D2C6 / Q9Y535 / RNA polymerase III subunit H
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 5019502
Gene end: 5030089
  
Corresponding Affymetrix probe sets: Dr.13091.1.S1_at (Zebrafish Array)   NM_001002476_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138726
NCBI entrez gene - 436749     See in Manteia.
RefSeq - NM_001002476
RefSeq Peptide - NP_001002476
swissprot - A0A0R4IQ64
ZFIN ID - ZDB-GENE-040718-179
Ensembl - ENSDARG00000102590
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR3HENSGALG00000011947Gallus gallus
 POLR3HENSG00000100413Homo sapiens
 Polr3hENSMUSG00000022476Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004519  DNA-directed RNA polymerase, subunit E/RPC8
 IPR005576  RNA polymerase Rpb7, N-terminal
 IPR012340  Nucleic acid-binding, OB-fold
 IPR013238  RNA polymerase III, subunit Rpc25


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0061484 hematopoietic stem cell homeostasis IMP
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000037 anatomical structure anatomical structure decreased amount , abnormal
Show

 ZFA:0001078 thymus thymus absent , abnormal
thymus T cell absent , abnormal
Show

 ZFA:0005023 hematopoietic system hematopoietic system posterior region decreased amount , abnormal
Show

 ZFA:0009354 hematopoietic multipotent progenitor cell hematopoietic multipotent progenitor cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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