ENSDARG00000102997


Danio rerio

Features
Gene ID: ENSDARG00000102997
  
Biological name :rrn3
  
Synonyms : rrn3 / RRN3 homolog, RNA polymerase I transcription factor
  
Possible biological names infered from orthology : B2RS91 / Q9NYV6 / RNA polymerase I-specific transcription initiation factor RRN3
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 36589427
Gene end: 36602500
  
Corresponding Affymetrix probe sets: Dr.6496.2.A1_at (Zebrafish Array)   XM_701870_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000131312
Ensembl peptide - ENSDARP00000140362
Ensembl peptide - ENSDARP00000131383
NCBI entrez gene - 558718     See in Manteia.
RefSeq - XM_005164109
RefSeq - XM_009299627
RefSeq - XM_701870
swissprot - A0A0R4IDT1
swissprot - A0A0R4ICI5
ZFIN ID - ZDB-GENE-080225-1
Ensembl - ENSDARG00000102997
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RRN3ENSGALG00000041989Gallus gallus
 RRN3ENSG00000085721Homo sapiens
 Rrn3ENSMUSG00000022682Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007991  RNA polymerase I specific transcription initiation factor RRN3
 IPR011989  Armadillo-like helical


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000035066 ubtf / upstream binding transcription factor, RNA polymerase I / P17480* / Q3USZ2* / P0CB47* / UBTFL1* / upstream binding transcription factor, RNA polymerase I-like 1*  / complex / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr