ENSGALG00000041989


Gallus gallus

Features
Gene ID: ENSGALG00000041989
  
Biological name :RRN3
  
Synonyms : RRN3 / RRN3 homolog, RNA polymerase I transcription factor
  
Possible biological names infered from orthology : B2RS91 / Q9NYV6 / RNA polymerase I-specific transcription initiation factor RRN3
  
Species: Gallus gallus
  
Chr. number: 14
Strand: -1
Band:
Gene start: 83580
Gene end: 97788
  
Corresponding Affymetrix probe sets: Gga.17331.1.S1_s_at (Chicken Array)   Gga.17331.2.S1_at (Chicken Array)   Gga.4903.1.S1_at (Chicken Array)   GgaAffx.12287.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055244
Ensembl peptide - ENSGALP00000061218
Ensembl peptide - ENSGALP00000058351
NCBI entrez gene - 416414     See in Manteia.
RefSeq - XM_015294142
RefSeq - XM_015294143
RefSeq - NM_001277156
RefSeq Peptide - NP_001264085
swissprot - Q5ZKA0
swissprot - A0A1L1RQZ5
swissprot - A0A1D5PZE0
Ensembl - ENSGALG00000041989
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rrn3ENSDARG00000102997Danio rerio
 RRN3ENSG00000085721Homo sapiens
 Rrn3ENSMUSG00000022682Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007991  RNA polymerase I specific transcription initiation factor RRN3
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006356 regulation of transcription by RNA polymerase I IEA
 biological_processGO:0006361 transcription initiation from RNA polymerase I promoter IEA
 biological_processGO:0007000 nucleolus organization IEA
 biological_processGO:0007028 cytoplasm organization IEA
 biological_processGO:0008283 cell proliferation IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0048872 homeostasis of number of cells IEA
 biological_processGO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator IEA
 biological_processGO:2000142 regulation of DNA-templated transcription, initiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0001042 RNA polymerase I core binding IBA
 molecular_functionGO:0001164 RNA polymerase I CORE element sequence-specific DNA binding IEA
 molecular_functionGO:0001181 RNA polymerase I general transcription initiation factor activity IBA
 molecular_functionGO:0070063 RNA polymerase binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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