ENSDARG00000102998


Danio rerio

Features
Gene ID: ENSDARG00000102998
  
Biological name :taf6
  
Synonyms : taf6 / TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor
  
Possible biological names infered from orthology : Mus musculus TATA-box binding protein associated factor 6 (Taf6), transcript variant 4, mRNA. / P49848 / Q62311 / TATA-box binding protein associated factor 6
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 53580846
Gene end: 53765478
  
Corresponding Affymetrix probe sets: Dr.2070.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000148212
Ensembl peptide - ENSDARP00000132888
Ensembl peptide - ENSDARP00000134854
NCBI entrez gene - 447818     See in Manteia.
swissprot - F1QGC2
swissprot - Q66HZ5
ZFIN ID - ZDB-GENE-040912-23
Ensembl - ENSDARG00000102998
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TAF6ENSG00000106290Homo sapiens
 Taf6ENSMUSG00000036980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
taf6l / TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor / Q9Y6J9* / Q8R2K4* / Q9CY24* / TATA-box binding protein associated factor 6 like*ENSDARG0000007968418


Protein motifs (from Interpro)
Interpro ID Name
 IPR004823  TATA box binding protein associated factor (TAF)
 IPR009072  Histone-fold
 IPR011442  TAF6, C-terminal HEAT repeat domain
 IPR011989  Armadillo-like helical


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0051090 regulation of DNA-binding transcription factor activity IEA
 cellular_componentGO:0000124 SAGA complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0046695 SLIK (SAGA-like) complex IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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