ENSG00000106290


Homo sapiens

Features
Gene ID: ENSG00000106290
  
Biological name :TAF6
  
Synonyms : P49848 / TAF6 / TATA-box binding protein associated factor 6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q22.1
Gene start: 100107070
Gene end: 100119841
  
Corresponding Affymetrix probe sets: 203572_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000399982
Ensembl peptide - ENSP00000395627
Ensembl peptide - ENSP00000406315
Ensembl peptide - ENSP00000428639
Ensembl peptide - ENSP00000428071
Ensembl peptide - ENSP00000427710
Ensembl peptide - ENSP00000419760
Ensembl peptide - ENSP00000419555
Ensembl peptide - ENSP00000416396
Ensembl peptide - ENSP00000413614
Ensembl peptide - ENSP00000412346
Ensembl peptide - ENSP00000410012
Ensembl peptide - ENSP00000344537
Ensembl peptide - ENSP00000389575
Ensembl peptide - ENSP00000390073
Ensembl peptide - ENSP00000390220
NCBI entrez gene - 6878     See in Manteia.
OMIM - 602955
RefSeq - XM_017012568
RefSeq - NM_001190415
RefSeq - NM_005641
RefSeq - NM_139315
RefSeq - XM_006716100
RefSeq - XM_006716101
RefSeq - XM_006716102
RefSeq - XM_011516542
RefSeq - XM_011516543
RefSeq Peptide - NP_005632
RefSeq Peptide - NP_647476
RefSeq Peptide - NP_001177344
swissprot - P49848
swissprot - A0A1D5RMS5
swissprot - E5RKA5
swissprot - E5RHA1
swissprot - C9JTY6
swissprot - C9JIS2
swissprot - C9JI39
swissprot - C9JHQ8
swissprot - C9JFL8
swissprot - C9J088
swissprot - C9J7C4
swissprot - F8WEJ7
swissprot - J3KR72
Ensembl - ENSG00000106290
  
Related genetic diseases (OMIM): 617126 - Alazami-Yuan syndrome, 617126
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf6ENSDARG00000102998Danio rerio
 Taf6ENSMUSG00000036980Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TAF6L / Q9Y6J9 / TATA-box binding protein associated factor 6 likeENSG0000016222718


Protein motifs (from Interpro)
Interpro ID Name
 IPR004823  TATA box binding protein associated factor (TAF)
 IPR009072  Histone-fold
 IPR011442  TAF6, C-terminal HEAT repeat domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006367 transcription initiation from RNA polymerase II promoter TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0042795 snRNA transcription by RNA polymerase II TAS
 biological_processGO:0045786 negative regulation of cell cycle IDA
 biological_processGO:0051090 regulation of DNA-binding transcription factor activity IEA
 biological_processGO:1901796 regulation of signal transduction by p53 class mediator TAS
 cellular_componentGO:0000124 SAGA complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0032991 protein-containing complex IMP
 cellular_componentGO:0033276 transcription factor TFTC complex IDA
 cellular_componentGO:0046695 SLIK (SAGA-like) complex IEA
 cellular_componentGO:0071339 MLL1 complex IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017162 aryl hydrocarbon receptor binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
HIV Transcription Initiation
RNA Polymerase II HIV Promoter Escape
Transcription of the HIV genome
RNA Polymerase II Pre-transcription Events
Regulation of TP53 Activity through Phosphorylation
RNA polymerase II transcribes snRNA genes
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Initiation And Promoter Clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000448 Prominent nose 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000574 Thick eyebrows 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000678 Dental overcrowding 
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 HP:0000752 Hyperactivity 
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0002465 Poor speech 
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 HP:0002553 Arched eyebrows 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0010055 Broad hallux 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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