ENSDARG00000103718


Danio rerio

Features
Gene ID: ENSDARG00000103718
  
Biological name :chmp5b
  
Synonyms : charged multivesicular body protein 5b / chmp5b / Q7T339
  
Possible biological names infered from orthology : charged multivesicular body protein 5 / CHMP5 / Q9D7S9 / Q9NZZ3
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 59046524
Gene end: 59054322
  
Corresponding Affymetrix probe sets: Dr.11471.1.S1_at (Zebrafish Array)   NM_200380_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138817
NCBI entrez gene - 393351     See in Manteia.
RefSeq - NM_200380
RefSeq Peptide - NP_956674
swissprot - Q7T339
ZFIN ID - ZDB-GENE-040426-1374
Ensembl - ENSDARG00000103718
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CHMP5ENSGALG00000013160Gallus gallus
 CHMP5ENSG00000086065Homo sapiens
 Chmp5ENSMUSG00000028419Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
chmp5a / charged multivesicular body protein 5a / CHMP5* / Q9D7S9* / Q9NZZ3* / charged multivesicular body protein 5*ENSDARG0000003885587


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000030114 vps4a / vacuolar protein sorting 4a homolog A (S. cerevisiae) / Q8VEJ9* / Q9UN37* / AC026464.4* / vacuolar protein sorting 4A* / vacuolar protein sorting 4 homolog A*  / complex






 

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contact: otassy@igbmc.fr