ENSDARG00000030114


Danio rerio

Features
Gene ID: ENSDARG00000030114
  
Biological name :vps4a
  
Synonyms : vacuolar protein sorting 4a homolog A (S. cerevisiae) / vps4a
  
Possible biological names infered from orthology : AC026464.4 / Q8VEJ9 / Q9UN37 / vacuolar protein sorting 4A / vacuolar protein sorting 4 homolog A
  
Species: Danio rerio
  
Chr. number: 25
Strand: 1
Band:
Gene start: 34938317
Gene end: 34948058
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000042677
NCBI entrez gene - 767670     See in Manteia.
RefSeq - NM_001076609
RefSeq Peptide - NP_001070077
swissprot - Q08BZ6
ZFIN ID - ZDB-GENE-060929-388
Ensembl - ENSDARG00000030114
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000040713Gallus gallus
 AC026464.4ENSG00000260914Homo sapiens
 VPS4AENSG00000132612Homo sapiens
 Vps4aENSMUSG00000031913Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vps4b / vacuolar protein sorting 4b homolog B (S. cerevisiae)ENSDARG0000006917577
katna1 / Q5RII9 / katanin p60 (ATPase containing) subunit A 1 / O75449* / katanin catalytic subunit A1*ENSDARG0000002182735
katnal1 / katanin p60 subunit A-like 1 / Q9BW62* / katanin catalytic subunit A1 like 1*ENSDARG0000009915633
katnal2 / katanin p60 subunit A-like 2 / Q8IYT4* / Q9D3R6* / katanin catalytic subunit A1 like 2* / Katanin p60 ATPase-containing subunit A-like 2 *ENSDARG0000001227531
si:dkey-185p13.1 / VPS4B* / P46467* / O75351* / vacuolar protein sorting 4B* / vacuolar protein sorting 4 homolog B*ENSDARG000000958377


Protein motifs (from Interpro)
Interpro ID Name
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR007330  MIT
 IPR015415  Vps4 oligomerisation, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000103718 Q7T339 / chmp5b / charged multivesicular body protein 5b / CHMP5* / Q9NZZ3* / Q9D7S9* / charged multivesicular body protein 5*  / complex






 

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