ENSDARG00000103799


Danio rerio

Features
Gene ID: ENSDARG00000103799
  
Biological name :kars
  
Synonyms : kars / lysyl-tRNA synthetase
  
Possible biological names infered from orthology : Lysine--tRNA ligase / Q15046 / Q99MN1
  
Species: Danio rerio
  
Chr. number: 7
Strand: 1
Band:
Gene start: 67429185
Gene end: 67451386
  
Corresponding Affymetrix probe sets: Dr.815.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000131146
Ensembl peptide - ENSDARP00000144447
Ensembl peptide - ENSDARP00000136176
Ensembl peptide - ENSDARP00000134262
NCBI entrez gene - 280647     See in Manteia.
swissprot - A0A0R4IKM7
swissprot - A0A0R4ICR3
swissprot - A0A0R4IC11
swissprot - Q6DHE6
ZFIN ID - ZDB-GENE-021115-8
Ensembl - ENSDARG00000103799
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KARSENSGALG00000000907Gallus gallus
 KARSENSG00000065427Homo sapiens
 KarsENSMUSG00000031948Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002313  Lysine-tRNA ligase, class II
 IPR004364  Aminoacyl-tRNA synthetase, class II (D/K/N)
 IPR004365  OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
 IPR006195  Aminoacyl-tRNA synthetase, class II
 IPR012340  Nucleic acid-binding, OB-fold
 IPR018149  Lysyl-tRNA synthetase, class II, C-terminal
 IPR034762  Bacterial/eukaryotic lysine-tRNA ligase, class II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006430 lysyl-tRNA aminoacylation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004824 lysine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
gut quality , abnormal
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 ZFA:0000114 heart heart quality , abnormal
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 ZFA:0000123 liver liver hypoplastic , abnormal
liver quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk degenerate , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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