ENSDARG00000103856


Danio rerio

Features
Gene ID: ENSDARG00000103856
  
Biological name :ptcd3
  
Synonyms : pentatricopeptide repeat domain 3 / ptcd3
  
Possible biological names infered from orthology : Pentatricopeptide repeat domain-containing protein 3, mitochondrial / Q14C51 / Q96EY7
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 16126983
Gene end: 16151055
  
Corresponding Affymetrix probe sets: Dr.17093.1.A1_at (Zebrafish Array)   NM_001037372_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135512
NCBI entrez gene - 553325     See in Manteia.
RefSeq - NM_001037372
RefSeq Peptide - NP_001032449
swissprot - A0A0R4IKN8
ZFIN ID - ZDB-GENE-030131-6849
Ensembl - ENSDARG00000103856
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTCD3ENSGALG00000015773Gallus gallus
 PTCD3ENSG00000132300Homo sapiens
 Ptcd3ENSMUSG00000063884Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR033443  Pentacotripeptide-repeat region of PRORP


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0032543 mitochondrial translation IEA
 cellular_componentGO:0005739 mitochondrion IEA
 molecular_functionGO:0019843 rRNA binding IEA
 molecular_functionGO:0043024 ribosomal small subunit binding IEA


Pathways (from Reactome)
Pathway description
Mitochondrial translation elongation
Mitochondrial translation termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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