ENSDARG00000104085


Danio rerio

Features
Gene ID: ENSDARG00000104085
  
Biological name :abcd3a
  
Synonyms : abcd3a / ATP-binding cassette, sub-family D (ALD), member 3a
  
Possible biological names infered from orthology : ABCD3 / ATP-binding cassette, sub-family D (ALD), member 3 / ATP binding cassette subfamily D member 3 / P28288 / P55096
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 31310640
Gene end: 31332087
  
Corresponding Affymetrix probe sets: Dr.3614.1.S1_at (Zebrafish Array)   NM_213482_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000138371
NCBI entrez gene - 406803     See in Manteia.
RefSeq - NM_213482
RefSeq - XM_021470125
RefSeq Peptide - NP_998647
swissprot - A0A0R4IRL4
ZFIN ID - ZDB-GENE-040426-2868
Ensembl - ENSDARG00000104085
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ABCD3ENSGALG00000005647Gallus gallus
 ABCD3ENSG00000117528Homo sapiens
 Abcd3ENSMUSG00000028127Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
abcd3b / ATP-binding cassette, sub-family D (ALD), member 3b / ABCD3* / P55096* / P28288* / ATP binding cassette subfamily D member 3* / ATP-binding cassette, sub-family D (ALD), member 3*ENSDARG0000000294780
abcd1 / ATP-binding cassette, sub-family D (ALD), member 1 / P33897* / P48410* / ATP binding cassette subfamily D member 1*ENSDARG0000007487636
abcd4 / ATP-binding cassette, sub-family D (ALD), member 4 / O14678* / O89016* / ATP binding cassette subfamily D member 4*ENSDARG0000006177023
abcd2 / ATP-binding cassette, sub-family D (ALD), member 2 / Q9UBJ2* / ATP binding cassette subfamily D member 2*ENSDARG0000005940921


Protein motifs (from Interpro)
Interpro ID Name
 IPR003439  ABC transporter-like
 IPR003593  AAA+ ATPase domain
 IPR005283  Peroxysomal long chain fatty acyl transporter
 IPR011527  ABC transporter type 1, transmembrane domain
 IPR017871  ABC transporter, conserved site
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031241  ATP-binding cassette sub-family D member 3


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015910 peroxisomal long-chain fatty acid import IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005324 long-chain fatty acid transporter activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016887 ATPase activity IEA
 molecular_functionGO:0042626 ATPase activity, coupled to transmembrane movement of substances IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
ABC transporters in lipid homeostasis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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