ENSDARG00000104396


Danio rerio

Features
Gene ID: ENSDARG00000104396
  
Biological name :trim25
  
Synonyms : trim25 / tripartite motif containing 25
  
Possible biological names infered from orthology : E3 ubiquitin/ISG15 ligase TRIM25 / Q14258 / Q61510
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 18388327
Gene end: 18400623
  
Corresponding Affymetrix probe sets: Dr.11463.1.S1_at (Zebrafish Array)   NM_200175_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000134454
Ensembl peptide - ENSDARP00000156782
Ensembl peptide - ENSDARP00000140176
NCBI entrez gene - 393144     See in Manteia.
RefSeq - NM_200175
RefSeq Peptide - NP_956469
swissprot - A0A0R4IKI3
swissprot - A0A0J9YJJ8
ZFIN ID - ZDB-GENE-040426-797
Ensembl - ENSDARG00000104396
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM25ENSGALG00000003144Gallus gallus
 Q14258ENSG00000121060Homo sapiens
 Q61510ENSMUSG00000000275Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ftr82 / finTRIM family, member 82 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000005564725
ftr24 / finTRIM family, member 24 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000000839624
ftr23 / finTRIM family, member 23 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000006798524
CR352329.1 / Q96LD4* / TRIM47* / tripartite motif containing 47*ENSDARG0000005547624
ftr61 / finTRIM family, member 61 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000005552024
ftr88 / ftr90 / finTRIM family, member 88 / Q96LD4* / Q8C0E3* / TRIM47* / Trim80* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000009767923
ftr76 / finTRIM family, member 76 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000007609323
ftr57 / finTRIM family, member 57 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000007436023
ftr16 / ftr96 / finTRIM family, member 96 / Q96LD4* / Q8C0E3* / TRIM47* / Trim80* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000003204323
ftr56 / finTRIM family, member 56 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000003095423
FO834803.1 / Q96LD4* / TRIM47* / tripartite motif containing 47*ENSDARG0000011172223
ftr14 / finTRIM family, member 14 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000005329323
ftr55 / finTRIM family, member 55 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000000916123
ftr42 / finTRIM family, member 42 / Q96LD4* / TRIM47* / tripartite motif containing 47*ENSDARG0000011499223
ftr64 / finTRIM family, member 64 / Q96LD4* / TRIM47* / tripartite motif containing 47*ENSDARG0000010151423
ftr91 / finTRIM family, member 91 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000009800422
ftr01 / finTRIM family, member 1 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000000390922
ftr59 / finTRIM family, member 59 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000009586422
ftr13 / finTRIM family, member 13 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000007953722
ftr99 / finTRIM family, member 99 / Trim80* / Q96LD4* / Q8C0E3* / TRIM47* / tripartite motif containing 47* / tripartite motif-containing 80*ENSDARG0000003533922


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0039535 regulation of RIG-I signaling pathway IMP
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
ISG15 antiviral mechanism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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