ENSGALG00000003144


Gallus gallus

Features
Gene ID: ENSGALG00000003144
  
Biological name :TRIM25
  
Synonyms : Gallus gallus tripartite motif containing 25 (TRIM25), mRNA. / TRIM25
  
Possible biological names infered from orthology : E3 ubiquitin/ISG15 ligase TRIM25 / Q14258 / Q61510 / tripartite motif containing 25
  
Species: Gallus gallus
  
Chr. number: 18
Strand: -1
Band:
Gene start: 6353977
Gene end: 6361372
  
Corresponding Affymetrix probe sets: GgaAffx.25763.1.S1_at (Chicken Array)   GgaAffx.25763.1.S1_s_at (Chicken Array)   GgaAffx.25763.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000053240
Ensembl peptide - ENSGALP00000004962
NCBI entrez gene - 417401     See in Manteia.
RefSeq - XM_415653
RefSeq - NM_001318458
RefSeq Peptide - NP_001305387
swissprot - A0A0B5H7I8
swissprot - F1N9Y8
Ensembl - ENSGALG00000003144
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim25ENSDARG00000104396Danio rerio
 Q14258ENSG00000121060Homo sapiens
 Q61510ENSMUSG00000000275Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM29 / tripartite motif containing 29 / Q14134* / Q8R2Q0* / Tripartite motif-containing protein 29 *ENSGALG0000004236015
TRIM47 / tripartite motif containing 47 / Q8C0E3* / Q96LD4*ENSGALG0000002830110


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0006513 protein monoubiquitination IEA
 biological_processGO:0030433 ubiquitin-dependent ERAD pathway IEA
 biological_processGO:0036503 ERAD pathway IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0043627 response to estrogen IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0046596 regulation of viral entry into host cell IEA
 biological_processGO:0046597 negative regulation of viral entry into host cell IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:1902186 regulation of viral release from host cell IEA
 biological_processGO:1902187 negative regulation of viral release from host cell IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0045296 cadherin binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000010317 POLH / DNA polymerase eta / Q9JJN0* / Q9Y253*  / complex
 ENSGALG00000010700 RPA3 / replication protein A3 / P35244* / Q9CQ71* / Replication protein A 14 kDa subunit *  / complex
 ENSGALG00000003072 RPA1 / Q5ZJJ2 / Replication protein A 70 kDa DNA-binding subunit / Q8VEE4* / P27694* / replication protein A1*  / complex
 ENSGALG00000000734 RPA2 / RPA4* / Q13156* / P15927* / replication protein A2* / replication protein A4*  / complex
 ENSGALG00000037716 UBA52 / ubiquitin A-52 residue ribosomal protein fusion product 1 / P62984* / P62987* / Gm5239* / Gm11808* / predicted gene 11808*  / complex
 ENSGALG00000036790 P79781 / RPS27A / Ubiquitin-40S ribosomal protein S27a Ubiquitin 40S ribosomal protein S27a / P62983* / P62979* / AL136454.1* / ribosomal protein S27a*  / complex
 ENSGALG00000016766 REV1 / DNA repair protein REV1 / Q920Q2* / Q9UBZ9* / REV1, DNA directed polymerase*  / complex
 ENSGALG00000029292 PCNA / Q9DEA3 / Proliferating cell nuclear antigen / P17918* / P12004* / Pcna-ps2*  / complex
 ENSGALG00000014956 POLK / DNA polymerase kappa / Q9QUG2* / Q9UBT6* / polymerase (DNA directed), kappa*  / complex






 

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