ENSDARG00000104401


Danio rerio

Features
Gene ID: ENSDARG00000104401
  
Biological name :yme1l1b
  
Synonyms : yme1l1b / YME1-like 1b
  
Possible biological names infered from orthology : O88967 / Q96TA2 / YME1L1 / YME1 like 1 ATPase / YME1-like 1 (S. cerevisiae)
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 4044636
Gene end: 4070850
  
Corresponding Affymetrix probe sets: Dr.8942.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133581
NCBI entrez gene - 557907     See in Manteia.
RefSeq - NM_001331068
RefSeq Peptide - NP_001317997
swissprot - A0A0R4IJC7
ZFIN ID - ZDB-GENE-070410-25
Ensembl - ENSDARG00000104401
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YME1L1ENSGALG00000007492Gallus gallus
 Q96TA2ENSG00000136758Homo sapiens
 O88967ENSMUSG00000026775Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
yme1l1a / YME1-like 1a / Q96TA2* / YME1L1* / O88967* / YME1 like 1 ATPase* / YME1-like 1 (S. cerevisiae)*ENSDARG0000007519274


Protein motifs (from Interpro)
Interpro ID Name
 IPR000642  Peptidase M41
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR005936  Peptidase, FtsH
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr