ENSG00000136758


Homo sapiens

Features
Gene ID: ENSG00000136758
  
Biological name :YME1L1
  
Synonyms : Q96TA2 / YME1L1 / YME1 like 1 ATPase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: p12.1
Gene start: 27110112
Gene end: 27155266
  
Corresponding Affymetrix probe sets: 201351_s_at (Human Genome U133 Plus 2.0 Array)   201352_at (Human Genome U133 Plus 2.0 Array)   213830_at (Human Genome U133 Plus 2.0 Array)   216304_x_at (Human Genome U133 Plus 2.0 Array)   216540_at (Human Genome U133 Plus 2.0 Array)   217063_x_at (Human Genome U133 Plus 2.0 Array)   217065_at (Human Genome U133 Plus 2.0 Array)   232216_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000481724
Ensembl peptide - ENSP00000318480
Ensembl peptide - ENSP00000365139
Ensembl peptide - ENSP00000473302
Ensembl peptide - ENSP00000473557
Ensembl peptide - ENSP00000365184
Ensembl peptide - ENSP00000379590
Ensembl peptide - ENSP00000398713
NCBI entrez gene - 10730     See in Manteia.
OMIM - 607472
RefSeq - XM_011519300
RefSeq - NM_001253866
RefSeq - NM_014263
RefSeq - NM_139312
RefSeq Peptide - NP_055078
RefSeq Peptide - NP_647473
RefSeq Peptide - NP_001240795
swissprot - Q5T8D2
swissprot - Q6PJ89
swissprot - Q96I63
swissprot - Q96TA2
swissprot - R4GNA5
swissprot - Q5T8D1
Ensembl - ENSG00000136758
  
Related genetic diseases (OMIM): 617302 - ?Optic atrophy 11, 617302
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 yme1l1aENSDARG00000075192Danio rerio
 yme1l1bENSDARG00000104401Danio rerio
 YME1L1ENSGALG00000007492Gallus gallus
 O88967ENSMUSG00000026775Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000642  Peptidase M41
 IPR003593  AAA+ ATPase domain
 IPR003959  ATPase, AAA-type, core
 IPR003960  ATPase, AAA-type, conserved site
 IPR005936  Peptidase, FtsH
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR037219  Peptidase M41-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006515 protein quality control for misfolded or incompletely synthesized proteins IMP
 biological_processGO:0006851 mitochondrial calcium ion transmembrane transport TAS
 biological_processGO:0007005 mitochondrion organization IMP
 biological_processGO:0008283 cell proliferation IMP
 biological_processGO:0034214 protein hexamerization IDA
 biological_processGO:0034982 mitochondrial protein processing IMP
 biological_processGO:0035694 mitochondrial protein catabolic process IMP
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004176 ATP-dependent peptidase activity IBA
 molecular_functionGO:0004222 metalloendopeptidase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008237 metallopeptidase activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Processing of SMDT1


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000400 Large ears 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000646 Amblyopia "Reduced visual acuity that is uncorrectable by lenses in the absence of detectable anatomic defects in the eye or visual pathways. Ambylopia can result from visual deprivation during the critical period of development of visual abilities which lasts to about the age of 8 years. Thus, ambylopia can result from strabismus, anisometropia, or high hypermetropia in there is a failure to form a focused image in one or both eyes." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001310 Dysmetria 
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0002352 Leukoencephalopathy 
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 HP:0002487 Hyperkinesis 
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 HP:0003593 Early onset 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000175193 PARL / Q9H300 / presenilin associated rhomboid like  / complex
 ENSG00000165283 Q9UJZ1 / STOML2 / stomatin like 2  / complex






 

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contact: otassy@igbmc.fr