ENSDARG00000104889


Danio rerio

Features
Gene ID: ENSDARG00000104889
  
Biological name :kpnb1
  
Synonyms : karyopherin (importin) beta 1 / kpnb1
  
Possible biological names infered from orthology : Importin subunit beta-1 / karyopherin subunit beta 1 / P70168 / Q14974
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 48024457
Gene end: 48037702
  
Corresponding Affymetrix probe sets: Dr.20448.1.S1_at (Zebrafish Array)   Dr.25284.1.A1_at (Zebrafish Array)   NM_001037702_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000135519
NCBI entrez gene - 570700     See in Manteia.
RefSeq - NM_001037702
RefSeq Peptide - NP_001032791
swissprot - A0A0R4IMZ8
ZFIN ID - ZDB-GENE-030131-2579
Ensembl - ENSDARG00000104889
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 KPNB1ENSGALG00000036962Gallus gallus
 KPNB1ENSG00000108424Homo sapiens
 Kpnb1ENSMUSG00000001440Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000225  Armadillo
 IPR001494  Importin-beta, N-terminal domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008536 Ran GTPase binding IEA


Pathways (from Reactome)
Pathway description
Regulation of cholesterol biosynthesis by SREBP (SREBF)
Activation of DNA fragmentation factor
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000057026 ran / P79735 / RAN, member RAS oncogene family / P62827* / P62826* / Q61820* / Rasl2-9* / 1700009N14Rik* / RIKEN cDNA 1700009N14 gene* / RAS-like, family 2, locus 9* / GTP-binding nuclear p...  / reaction / complex






 

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contact: otassy@igbmc.fr