ENSDARG00000105190


Danio rerio

Features
Gene ID: ENSDARG00000105190
  
Biological name :rhbdl3
  
Synonyms : rhbdl3 / rhomboid, veinlet-like 3 (Drosophila)
  
Possible biological names infered from orthology : P58872 / P58873 / rhomboid like 3 / Rhomboid-related protein 3
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 18623492
Gene end: 18698669
  
Corresponding Affymetrix probe sets: Dr.17903.1.A1_at (Zebrafish Array)   Dr.2439.1.A1_at (Zebrafish Array)   Dr.25770.2.A1_at (Zebrafish Array)   Dr.25770.3.A1_at (Zebrafish Array)   Dr.439.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000143289
Ensembl peptide - ENSDARP00000134045
Ensembl peptide - ENSDARP00000139086
Ensembl peptide - ENSDARP00000140145
NCBI entrez gene - 550128     See in Manteia.
RefSeq - NM_001017556
RefSeq - XM_005166184
RefSeq - XM_009302349
RefSeq Peptide - NP_001017556
swissprot - Q2A943
swissprot - Q566N3
swissprot - A0A0R4IRL0
ZFIN ID - ZDB-GENE-050417-2
Ensembl - ENSDARG00000105190
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RHBDL3ENSGALG00000003426Gallus gallus
 P58872ENSG00000141314Homo sapiens
 P58873ENSMUSG00000017692Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rhbdl1 / rhomboid, veinlet-like 1 (Drosophila) / O75783* / rhomboid like 1*ENSDARG0000008704051
rhbdl2 / rhomboid, veinlet-like 2 (Drosophila) / Q9NX52* / A2AGA4* / rhomboid like 2* / Rhomboid-related protein 2 Rhomboid-related protein 2, N-terminal fragment Rhomboid-related protein 2...ENSDARG0000006983325


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR002610  Peptidase S54, rhomboid
 IPR011992  EF-hand domain pair
 IPR017213  Peptidase S54, rhomboid, metazoan
 IPR018247  EF-Hand 1, calcium-binding site
 IPR022764  Peptidase S54, rhomboid domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0016485 protein processing IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 molecular_functionGO:0004252 serine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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