ENSMUSG00000017692


Mus musculus

Features
Gene ID: ENSMUSG00000017692
  
Biological name :Rhbdl3
  
Synonyms : P58873 / Rhbdl3 / Rhomboid-related protein 3
  
Possible biological names infered from orthology : P58872 / rhomboid like 3
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B5
Gene start: 80300912
Gene end: 80355955
  
Corresponding Affymetrix probe sets: 10379436 (MoGene1.0st)   1427579_at (Mouse Genome 430 2.0 Array)   1435941_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000017836
NCBI entrez gene - 246104     See in Manteia.
MGI - MGI:2179276
RefSeq - XM_011249021
RefSeq - NM_139228
RefSeq - XM_006533330
RefSeq - XM_006533331
RefSeq - XM_006533326
RefSeq - XM_006533327
RefSeq - XM_006533328
RefSeq - XM_006533329
RefSeq Peptide - NP_631974
swissprot - P58873
Ensembl - ENSMUSG00000017692
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rhbdl3ENSDARG00000105190Danio rerio
 RHBDL3ENSGALG00000003426Gallus gallus
 P58872ENSG00000141314Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8VC82 / Rhbdl1 / Rhomboid-related protein 1 / O75783* / rhomboid like 1*ENSMUSG0000002573550
A2AGA4 / Rhbdl2 / Rhomboid-related protein 2 Rhomboid-related protein 2, N-terminal fragment Rhomboid-related protein 2, C-terminal fragment / Q9NX52* / rhomboid like 2*ENSMUSG0000004333325


Protein motifs (from Interpro)
Interpro ID Name
 IPR002048  EF-hand domain
 IPR002610  Peptidase S54, rhomboid
 IPR011992  EF-hand domain pair
 IPR017213  Peptidase S54, rhomboid, metazoan
 IPR022764  Peptidase S54, rhomboid domain
 IPR035952  Rhomboid-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0016485 protein processing IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 molecular_functionGO:0004252 serine-type endopeptidase activity IBA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008236 serine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

 MP:0011110 partial preweaning lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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