ENSDARG00000116491


Danio rerio

Features
Gene ID: ENSDARG00000116491
  
Biological name :h2afvb
  
Synonyms : h2afvb / H2A histone family, member Vb
  
Possible biological names infered from orthology : H2AFZ / H2A histone family member Z / Histone H2A.Z / P0C0S5 / P0C0S6
  
Species: Danio rerio
  
Chr. number: 10
Strand: 1
Band:
Gene start: 44984946
Gene end: 44998452
  
Corresponding Affymetrix probe sets: Dr.808.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136687
Ensembl peptide - ENSDARP00000154835
NCBI entrez gene - 403077     See in Manteia.
swissprot - Q0Z946
ZFIN ID - ZDB-GENE-050506-24
Ensembl - ENSDARG00000116491
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 H2AFZENSG00000164032Homo sapiens
 H2afzENSMUSG00000037894Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q71PD7 / h2afva / H2A histone family, member Va / H2AFV* / Q3THW5* / Q71UI9* / Histone H2A.V * / H2A histone family member V*ENSDARG0000006882098


Protein motifs (from Interpro)
Interpro ID Name
 IPR002119  Histone H2A
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold
 IPR032454  Histone H2A, C-terminal domain
 IPR032458  Histone H2A conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Condensation of Prophase Chromosomes
Oxidative Stress Induced Senescence
Senescence-Associated Secretory Phenotype (SASP)
SIRT1 negatively regulates rRNA expression
NoRC negatively regulates rRNA expression
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3
RNA Polymerase I Promoter Opening
RNA Polymerase I Chain Elongation
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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