ENSG00000007062


Homo sapiens

Features
Gene ID: ENSG00000007062
  
Biological name :PROM1
  
Synonyms : O43490 / PROM1 / prominin 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: p15.32
Gene start: 15963076
Gene end: 16084378
  
Corresponding Affymetrix probe sets: 204304_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000426090
Ensembl peptide - ENSP00000425927
Ensembl peptide - ENSP00000426809
Ensembl peptide - ENSP00000443620
Ensembl peptide - ENSP00000438045
Ensembl peptide - ENSP00000427346
Ensembl peptide - ENSP00000415481
Ensembl peptide - ENSP00000422704
Ensembl peptide - ENSP00000423793
Ensembl peptide - ENSP00000423860
Ensembl peptide - ENSP00000424569
Ensembl peptide - ENSP00000424738
NCBI entrez gene - 8842     See in Manteia.
OMIM - 604365
RefSeq - XM_017008805
RefSeq - XM_011513894
RefSeq - XM_011513895
RefSeq - XM_011513896
RefSeq - XM_011513897
RefSeq - XM_011513898
RefSeq - XM_011513899
RefSeq - XM_011513900
RefSeq - XM_011513902
RefSeq - XM_011513903
RefSeq - XM_017008799
RefSeq - XM_017008800
RefSeq - XM_017008801
RefSeq - XM_017008802
RefSeq - XM_017008803
RefSeq - XM_017008804
RefSeq - NM_001145847
RefSeq - NM_001145848
RefSeq - NM_001145849
RefSeq - NM_001145850
RefSeq - NM_001145851
RefSeq - NM_001145852
RefSeq - NM_006017
RefSeq - XM_005248195
RefSeq - XM_005248196
RefSeq - XM_006713974
RefSeq - XM_011513890
RefSeq - XM_011513892
RefSeq - XM_011513893
RefSeq Peptide - NP_001139320
RefSeq Peptide - NP_001139321
RefSeq Peptide - NP_001139322
RefSeq Peptide - NP_001139323
RefSeq Peptide - NP_001139324
RefSeq Peptide - NP_006008
RefSeq Peptide - NP_001139319
swissprot - D6RIF3
swissprot - O43490
swissprot - D6RCC3
swissprot - D6RBI0
swissprot - H0Y9D4
swissprot - H0Y9M7
swissprot - H0Y9Q5
swissprot - A0A0A0N0M1
Ensembl - ENSG00000007062
  
Related genetic diseases (OMIM): 603786 - Stargardt disease 4, 603786
  608051 - Macular dystrophy, retinal, 2, 608051
  612095 - Retinitis pigmentosa 41, 612095
  612657 - Cone-rod dystrophy 12, 612657
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 prom1aENSDARG00000039966Danio rerio
 prom1bENSDARG00000034007Danio rerio
 PROM1ENSGALG00000014496Gallus gallus
 Prom1ENSMUSG00000029086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PROM2 / Q8N271 / prominin 2ENSG0000015506624


Protein motifs (from Interpro)
Interpro ID Name
 IPR008795  Prominin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010842 retina layer formation ISS
 biological_processGO:0045494 photoreceptor cell maintenance IMP
 biological_processGO:0060042 retina morphogenesis in camera-type eye IMP
 biological_processGO:0060219 camera-type eye photoreceptor cell differentiation IMP
 biological_processGO:0072112 glomerular visceral epithelial cell differentiation IMP
 biological_processGO:0072139 glomerular parietal epithelial cell differentiation IMP
 biological_processGO:2000768 positive regulation of nephron tubule epithelial cell differentiation IMP
 cellular_componentGO:0001750 photoreceptor outer segment ISS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005793 endoplasmic reticulum-Golgi intermediate compartment IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0009986 cell surface IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031528 microvillus membrane IEA
 cellular_componentGO:0031982 vesicle HDA
 cellular_componentGO:0042622 photoreceptor outer segment membrane IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042805 actinin binding IDA
 molecular_functionGO:0045296 cadherin binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000493 Abnormality of the fovea 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000548 Cone-rod dystrophy 
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 HP:0000550 Abolished electroretinogram (ERG) 
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 HP:0000551 Abnormal color vision 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000603 Central scotoma 
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 HP:0000608 Macular degeneration 
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 HP:0000610 Abnormality of the choroid 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000649 Abnormality of vision evoked potentials 
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 HP:0000662 Night blindness 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007641 Secondary dyschromatopsia 
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 HP:0007663 Decreased central vision 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007704 Abnormal eye movements, paroxysmal 
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 HP:0007722 Loss of retinal pigment epithelium 
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 HP:0007754 Macular dystrophy 
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 HP:0007793 Bilateral macular retinal pigment epithelial mottling 
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 HP:0007814 Salt and pepper retinopathy, early 
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 HP:0007994 Peripheral visual field loss 
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 HP:0008002 Macular pigmentary changes 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008059 Aplasia/Hypoplasia of the macula 
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 HP:0008736 Hypoplasia of penis 
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 HP:0012045 Retinal flecks "Presence of multiple yellowish-white lesions of various size and configuration on the retina not related to vascular lesions." [pmid:7952338]
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 HP:0030329 Retinal thinning "Reduced anteroposterior thickness of the retina. This phenotype can be appreciated by retinal optical coherence tomography (OCT)." [HPO:probinson]
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 HP:0030500 Yellow/white lesions of the macula 
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 HP:0030629 Perifoveal ring of hyperautofluorescence 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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