ENSG00000012232


Homo sapiens

Features
Gene ID: ENSG00000012232
  
Biological name :EXTL3
  
Synonyms : exostosin like glycosyltransferase 3 / EXTL3 / O43909
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p21.1
Gene start: 28600469
Gene end: 28755599
  
Corresponding Affymetrix probe sets: 209202_s_at (Human Genome U133 Plus 2.0 Array)   211051_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000428352
Ensembl peptide - ENSP00000431013
Ensembl peptide - ENSP00000430652
Ensembl peptide - ENSP00000429627
Ensembl peptide - ENSP00000428691
Ensembl peptide - ENSP00000220562
NCBI entrez gene - 2137     See in Manteia.
OMIM - 605744
RefSeq - NM_001440
RefSeq - XM_011544440
RefSeq Peptide - NP_001431
swissprot - E7ET85
swissprot - O43909
swissprot - H0YBJ7
swissprot - E5RK02
swissprot - E5RIV6
swissprot - H0YB01
Ensembl - ENSG00000012232
  
Related genetic diseases (OMIM): 617425 - Immunoskeletal dysplasia with neurodevelopmental abnormalities, 617425
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 extl3ENSDARG00000026811Danio rerio
 EXTL3ENSGALG00000016630Gallus gallus
 Extl3ENSMUSG00000021978Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
EXT2 / Q93063 / exostosin glycosyltransferase 2ENSG0000015134827
EXT1 / Q16394 / exostosin glycosyltransferase 1ENSG0000018219723
EXTL1 / Q92935 / exostosin like glycosyltransferase 1ENSG0000015800820
EXTL2 / Q9UBQ6 / exostosin like glycosyltransferase 2ENSG0000016269410


Protein motifs (from Interpro)
Interpro ID Name
 IPR004263  Exostosin-like
 IPR015338  Exostosin , C-terminal
 IPR029044  Nucleotide-diphospho-sugar transferases


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0015012 heparan sulfate proteoglycan biosynthetic process IEA
 biological_processGO:0030307 positive regulation of cell growth IEA
 biological_processGO:0036498 IRE1-mediated unfolded protein response TAS
 cellular_componentGO:0005783 endoplasmic reticulum IDA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0001888 glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
XBP1(S) activates chaperone genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000253 Microcephaly, progressive "Progressive microcephaly is diagnosed when the head circumference falls progressively behind age- and gender-dependent norms." [HPO:curators]
Show

 HP:0000280 Coarse facial features 
Show

 HP:0000293 Full cheeks 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000448 Prominent nose 
Show

 HP:0000455 Broad nasal tip 
Show

 HP:0000926 Platyspondyly 
Show

 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
Show

 HP:0001019 Erythroderma "An inflammatory exfoliative dermatosis involving nearly all of the surface of the skin. Erythroderma develops suddenly. A patchy erythema may generalize and spread to affect most of the skin. Scaling may appear in 2-6 days and be accompanied by hot, red, dry skin, malaise, and fever." [HPO:probinson]
Show

 HP:0001156 Brachydactyly 
Show

 HP:0001216 Delayed maturation/delayed ossification of carpal bones 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001270 Motor retardation 
Show

 HP:0001407 Hepatic cysts 
Show

 HP:0001880 Eosinophilia "Increased count of eosinophile granulocytes in the blood." [HPO:sdoelken]
Show

 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
Show

 HP:0002656 Epiphyseal dysplasia 
Show

 HP:0002673 Coxa valga "Coxa valga is a deformity of the hip in which the angle between the femoral shaft and the femoral neck is increased compared to age-adjusted values (about 150 degrees in newborns gradually reducing to 120-130 degrees in adults)." [HPO:curators]
Show

 HP:0002719 Recurrent infections 
Show

 HP:0002751 Kyphoscoliosis 
Show

 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
Show

 HP:0003090 Small capital femoral epiphyses 
Show

 HP:0003375 Narrow greater sacrosciatic notches "A narrowing of the sacrosciatic notch, i.e., the deep indentation in the posterior border of the hip bone at the point of union of the ilium and ischium." [HPO:curators]
Show

 HP:0003498 Short stature, disproportionate 
Show

 HP:0004313 Reduced immunoglobulin levels 
Show

 HP:0005280 Depressed nasal root and bridge 
Show

 HP:0008462 Cervical instability 
Show

 HP:0008936 Muscular hypotonia of the trunk "Muscular hypotonia (abnormally low muscle tone) affecting the musculature of the trunk." [HPO:curators]
Show

 HP:0100255 Metaphyseal dysplasia "The presence of dysplastic regions in metaphyseal bones." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr