ENSG00000054116


Homo sapiens

Features
Gene ID: ENSG00000054116
  
Biological name :TRAPPC3
  
Synonyms : O43617 / trafficking protein particle complex 3 / TRAPPC3
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.3
Gene start: 36136570
Gene end: 36156053
  
Corresponding Affymetrix probe sets: 203511_s_at (Human Genome U133 Plus 2.0 Array)   203512_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362257
Ensembl peptide - ENSP00000482052
Ensembl peptide - ENSP00000480648
Ensembl peptide - ENSP00000480332
Ensembl peptide - ENSP00000362261
Ensembl peptide - ENSP00000362253
Ensembl peptide - ENSP00000362256
NCBI entrez gene - 27095     See in Manteia.
OMIM - 610955
RefSeq - NM_001270896
RefSeq - NM_001270897
RefSeq - NM_014408
RefSeq - NM_001270894
RefSeq - NM_001270895
RefSeq Peptide - NP_001257824
RefSeq Peptide - NP_001257826
RefSeq Peptide - NP_055223
RefSeq Peptide - NP_001257823
RefSeq Peptide - NP_001257825
swissprot - O43617
swissprot - A0A087WYS5
swissprot - A0A087WWM0
swissprot - A6NKE1
Ensembl - ENSG00000054116
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc3ENSDARG00000045364Danio rerio
 Q5ZI57ENSGALG00000002284Gallus gallus
 O55013ENSMUSG00000028847Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q5T215 / TRAPPC3L / trafficking protein particle complex 3 likeENSG0000017362657


Protein motifs (from Interpro)
Interpro ID Name
 IPR007194  Transport protein particle (TRAPP) component
 IPR016721  Bet3 family
 IPR024096  NO signalling/Golgi transport ligand-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 biological_processGO:0048208 COPII vesicle coating TAS
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030008 TRAPP complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity TAS


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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