ENSG00000072364


Homo sapiens

Features
Gene ID: ENSG00000072364
  
Biological name :AFF4
  
Synonyms : AF4/FMR2 family member 4 / AFF4 / Q9UHB7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.1
Gene start: 132875379
Gene end: 132963634
  
Corresponding Affymetrix probe sets: 1555435_at (Human Genome U133 Plus 2.0 Array)   1555436_a_at (Human Genome U133 Plus 2.0 Array)   219199_at (Human Genome U133 Plus 2.0 Array)   225229_at (Human Genome U133 Plus 2.0 Array)   232864_s_at (Human Genome U133 Plus 2.0 Array)   232865_at (Human Genome U133 Plus 2.0 Array)   239439_at (Human Genome U133 Plus 2.0 Array)   243487_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000409069
Ensembl peptide - ENSP00000265343
Ensembl peptide - ENSP00000367858
Ensembl peptide - ENSP00000395268
NCBI entrez gene - 27125     See in Manteia.
OMIM - 604417
RefSeq - XM_006714587
RefSeq - NM_014423
RefSeq - XM_005271963
RefSeq - XM_005271964
RefSeq Peptide - NP_055238
swissprot - Q9UHB7
swissprot - H7C319
swissprot - C9JCE0
Ensembl - ENSG00000072364
  
Related genetic diseases (OMIM): 616368 - CHOPS syndrome, 616368
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 aff4ENSDARG00000001857Danio rerio
 AFF4ENSGALG00000030147Gallus gallus
 Aff4ENSMUSG00000049470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AFF1 / P51825 / AF4/FMR2 family member 1ENSG0000017249340
AFF2 / P51816 / AF4/FMR2 family member 2ENSG0000015596638
AFF3 / P51826 / AF4/FMR2 family member 3ENSG0000014421836


Protein motifs (from Interpro)
Interpro ID Name
 IPR007797  Transcription factor AF4/FMR2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter TAS
 biological_processGO:0007286 spermatid development IEA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0008023 transcription elongation factor complex IDA
 cellular_componentGO:0035327 transcriptionally active chromatin ISS
 molecular_functionGO:0003700 DNA-binding transcription factor activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000085 Horseshoe kidney 
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 HP:0000280 Coarse facial features 
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000365 Hearing loss 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000527 Long eyelashes "Mid upper eyelash length >10 mm or increased length of the eyelashes (subjective)." [pmid:19125427]
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 HP:0000574 Thick eyebrows 
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 HP:0000648 Optic atrophy 
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 HP:0001156 Brachydactyly 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001601 Laryngomalacia 
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 HP:0001643 Patent ductus arteriosus 
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 HP:0001671 Abnormality of the cardiac septa 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002777 Tracheal stenosis 
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 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
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 HP:0003577 Onset at birth 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006528 Chronic lung disease 
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 HP:0011951 Aspiration pneumonia "Pneumonia due to the aspiration (breathing in) of food, liquid, or gastric contents into the upper respiratory tract." [HPO:probinson]
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 HP:0100874 Thick hair "Increased density of `hairs` (FMA:53667), i.e., and elevanted number of hairs per unit area." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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