ENSG00000073578


Homo sapiens

Features
Gene ID: ENSG00000073578
  
Biological name :SDHA
  
Synonyms : P31040 / SDHA / succinate dehydrogenase complex flavoprotein subunit A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: 1
Band: p15.33
Gene start: 218241
Gene end: 256700
  
Corresponding Affymetrix probe sets: 201093_x_at (Human Genome U133 Plus 2.0 Array)   222021_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421911
Ensembl peptide - ENSP00000422404
Ensembl peptide - ENSP00000484230
Ensembl peptide - ENSP00000427703
Ensembl peptide - ENSP00000426514
Ensembl peptide - ENSP00000425077
Ensembl peptide - ENSP00000264932
NCBI entrez gene - 6389     See in Manteia.
OMIM - 600857
RefSeq - NM_001294332
RefSeq - XM_017009685
RefSeq - XM_011514073
RefSeq - XM_011514072
RefSeq - XM_005248331
RefSeq - NM_004168
RefSeq Peptide - NP_001281261
RefSeq Peptide - NP_001317687
RefSeq Peptide - NP_004159
swissprot - A0A087X1I3
swissprot - D6REB7
swissprot - P31040
swissprot - H0Y8S2
swissprot - A0A024QZ30
swissprot - H0Y8X1
swissprot - D6RFM5
Ensembl - ENSG00000073578
  
Related genetic diseases (OMIM): 252011 - Mitochondrial respiratory chain complex II deficiency, 252011
  256000 - Leigh syndrome, 256000
  613642 - Cardiomyopathy, dilated, 1GG, 613642
  614165 - Paragangliomas 5, 614165
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdhaENSDARG00000016721Danio rerio
 SDHAENSGALG00000013167Gallus gallus
 SdhaENSMUSG00000021577Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003952  Fumarate reductase/succinate dehydrogenase, FAD-binding site
 IPR003953  FAD-dependent oxidoreductase 2, FAD binding domain
 IPR011281  Succinate dehydrogenase, flavoprotein subunit
 IPR014006  Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
 IPR015939  Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal
 IPR027477  Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily
 IPR036188  FAD/NAD(P)-binding domain superfamily
 IPR037099  Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle TAS
 biological_processGO:0006105 succinate metabolic process IDA
 biological_processGO:0006121 mitochondrial electron transport, succinate to ubiquinone IBA
 biological_processGO:0007399 nervous system development IMP
 biological_processGO:0009061 anaerobic respiration IBA
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0022904 respiratory electron transport chain IDA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 cellular_componentGO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0043209 myelin sheath IEA
 molecular_functionGO:0000104 succinate dehydrogenase activity IMP
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008177 succinate dehydrogenase (ubiquinone) activity IMP
 molecular_functionGO:0009055 electron transfer activity IBA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEA
 molecular_functionGO:0050660 flavin adenine dinucleotide binding IEA


Pathways (from Reactome)
Pathway description
Respiratory electron transport
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000093 Proteinuria 
Show

 HP:0000096 Glomerulosclerosis 
Show

 HP:0000365 Hearing loss 
Show

 HP:0000405 Hearing loss, conductive 
Show

 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000505 Impaired vision 
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
Show

 HP:0000580 Pigmentary retinopathy 
Show

 HP:0000602 Ophthalmoplegia 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000712 Emotional lability 
Show

 HP:0000740 Anxiety (with pheochromocytoma) 
Show

 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
Show

 HP:0000980 Pallor 
Show

 HP:0000982 Palmoplantar keratoderma 
Show

 HP:0000988 Skin rash 
Show

 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
Show

 HP:0001069 Hyperhidrosis, episodic 
Show

 HP:0001095 Hypertensive retinopathy 
Show

 HP:0001249 Mental retardation 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
Show

 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
Show

 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
Show

 HP:0001293 Cranial nerve compression 
Show

 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
Show

 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
Show

 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
Show

 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001371 Contractures 
Show

 HP:0001392 Abnormality of the liver 
Show

 HP:0001404 Hepatocellular necrosis 
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001427 Mitochondrial inheritance "A mode of inheritance that is observed for traits related to a gene encoded on the mitochondrial genome. Because the mitochondrial genome is almost always maternally inherited, a mitochondrial condition can only be transmitted by females, although the condition can affect both sexes. The proportion of mutant mitochondria can vary (heteroplasmy)." [HPO:curators]
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001605 Vocal cord paralysis 
Show

 HP:0001618 Dysphonia 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001639 Hypertrophic cardiomyopathy 
Show

 HP:0001644 Dilated cardiomyopathy 
Show

 HP:0001824 Weight loss 
Show

 HP:0001874 Abnormality of neutrophil 
Show

 HP:0001903 Anemia 
Show

 HP:0001962 Palpitations 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002017 Nausea and vomiting 
Show

 HP:0002018 Nausea 
Show

 HP:0002019 Constipation 
Show

 HP:0002073 Progressive cerebellar ataxia 
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
Show

 HP:0002171 Gliosis 
Show

 HP:0002239 Gastrointestinal hemorrhage 
Show

 HP:0002331 Headache (with pheochromocytoma) 
Show

 HP:0002376 Developmental regression 
Show

 HP:0002415 Leukodystrophy 
Show

 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
Show

 HP:0002574 Episodic abdominal pain 
Show

 HP:0002668 Paragangliomas "A carotid body tumor (also called paraganglionoma or chemodectoma) is a tumor found in the upper neck at the branching of the carotid artery. They arise from the chemoreceptor organ (paraganglion) located in the adventitia of the carotid artery bifurcation." [HPO:curators]
Show

 HP:0002793 Abnormal respiratory patterns 
Show

 HP:0002864 Paragangliomas, head and neck 
Show

 HP:0002878 Early respiratory failure 
Show

 HP:0002928 Decreased activity of the pyruvate dehydrogenase (PDH) complex 
Show

 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
Show

 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
Show

 HP:0003198 Myopathy 
Show

 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
Show

 HP:0003236 Elevated serum creatine phosphokinase 
Show

 HP:0003345 Elevated urinary norepinephrine 
Show

 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
Show

 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
Show

 HP:0003528 Elevated calcitonin 
Show

 HP:0003546 Exercise intolerance 
Show

 HP:0003574 Positive regitine test 
Show

 HP:0003593 Early onset 
Show

 HP:0003639 Increased urinary epinephrine 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0003812 Phenotypic variability 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004897 lactic acidosis may occur with stress or infection 
Show

 HP:0005214 Intestinal obstruction 
Show

 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
Show

 HP:0006737 Pheochromocytoma, extraadrenal "Pheochromocytoma not originating from the adrenal medulla but from another source such as from chromaffin cells in or about sympathetic ganglia." [HPO:curators]
Show

 HP:0006748 Pheochromocytoma, adrenal "Pheochromocytoma originating from the adrenal medulla." [HPO:curators]
Show

 HP:0006753 Increased gastric cancer 
Show

 HP:0006980 Leukoencephalopathy, progressive 
Show

 HP:0007020 Progressive spastic paraplegia 
Show

 HP:0007183 Hyperintense lesions in the basal ganglia on mri 
Show

 HP:0007305 Cns demyelination 
Show

 HP:0007400 Irregular hyperpigmentation 
Show

 HP:0008314 Decreased activity of mitochondrial complex ii 
Show

 HP:0008316 Abnormal mitochondria on muscle biopsy 
Show

 HP:0008629 Pulsatile tinnitus "Pulsatile tinnitus is generally classified a kind of objective tinnitus, meaning that it is not only audible to the patient but also to the examiner on auscultation of the auditory canal and/or of surrounding structures with use of an auscultation tube or stethoscope. Usually, pulsatile tinnitus is heard as a lower pitched thumping or booming, a rougher blowing sound which is coincidental with respiration, or as a clicking, higher pitched rhythmic sensation. Pulsatile tinnitus may be associated with vascular abnormalities such as arterioevenous shunts or glomus tumors or the jugular vein, arterial bruits related to a high-riding carotid artery (close to the auditory areas) or carotid stenosis, or venous abnormalities such as a dehiscent jugular bulb or to hypertension. Finally, in some patients, mechanical abnormalities such a spatulous eustachian tubes, palatomyoclonus (small spasms of muscles in the soft palate area), or idiopathic stapedial muscle spasm may represent the underlying cause of pulsatile tinnitus." [HPO:curators]
Show

 HP:0008972 Decreased activities of mitochondrial-encoded respiratory chain complexes 
Show

 HP:0009711 Retinal hemangioblastoma "Retinal hemangioblastoma is a benign vascular tumor of the retina without any neoplastic characteristics. They have been called "retinal angiomas" and "retinal hemangiomas" but hemangioblastoma is the preferred term since they are histologically identical to lesions found in the CNS." [HPO:curators]
Show

 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
Show

 HP:0010532 Paroxysmal vertigo "Paroxysmal episodes of vertigo." [HPO:curators]
Show

 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
Show

 HP:0011703 Sinus tachycardia "Inappropriate sinus tachycardia is a nonparoxysmal tachyarrhythmia characterized by an increased resting heart rate (HR) and/or an exaggerated HR response to minimal exertion or a change in body posture. HR is constantly above the physiological range with no appropriate relation to metabolic or physiological demands." [HPO:probinson, pmid:15763524]
Show

 HP:0011979 Elevated urinary dopamine "An increased concentration of `dopamine` (CHEBI:18243) in the `urine` (FMA:12274)." [HPO:probinson]
Show

 HP:0012222 Arachnoid hemangiomatosis "The presence of multiple hemangiomas in the arachnoid." [HPO:probinson]
Show

 HP:0012240 Increased intramyocellular lipid droplets "An abnormal increase in intracellular lipid droplets In a muscle. The number and size of these drops can increase with somd disorders of lipid metabolism affecting muscle. See pmid 20691590 for histological images." [HPO:probinson, pmid:20691590]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0025269 Panic attack "A sudden episode of intense fear in a situation in which there is no danger or apparent cause. The panic attack is accompanied by symptoms such as palpitations, sweating and chills or hot flushes. There may be a sensation of dyspnea (being out of breath), chest pain, or abdominal distress. Some indiviudals with panic attacks may experience depersonalization, a fear of going crazy, or a fear of dying." []
Show

 HP:0030682 Left ventricular noncompaction "Left ventricular noncompaction (LVNC) is defined by 3 markers: prominent left ventricular (LV) trabeculae, deep intertrabecular recesses, and the thin compacted layer." [PMID:16670098, PMID:25443708]
Show

 HP:0031284 Flushing "Recurrent episodes of redness of the skin together with a sensation of warmth or burning of the affected areas of skin." []
Show

 HP:0100242 Sarcoma "The presence of a `sarcoma` (MPATH:551)." [HPO:sdoelken]
Show

 HP:0100273 Neoplasia of the colon 
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
Show

 HP:0100723 Gastrointestinal stroma tumor 
Show

 HP:0100743 Neoplasm of the rectum 
Show

 HP:0100749 Chest pain 
Show

 HP:0100751 Esophageal neoplasm 
Show

 HP:0100833 Neoplasm of the small intestine "The presence of a `neoplasm` (MPATH:218) of the small intestine." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000143252 SDHC / Q99643 / succinate dehydrogenase complex subunit C  / complex
 ENSG00000204370 SDHD / O14521 / succinate dehydrogenase complex subunit D  / complex
 ENSG00000117118 SDHB / P21912 / succinate dehydrogenase complex iron sulfur subunit B  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr