ENSG00000117118


Homo sapiens

Features
Gene ID: ENSG00000117118
  
Biological name :SDHB
  
Synonyms : P21912 / SDHB / succinate dehydrogenase complex iron sulfur subunit B
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.13
Gene start: 17018722
Gene end: 17054170
  
Corresponding Affymetrix probe sets: 202675_at (Human Genome U133 Plus 2.0 Array)   214166_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000364649
Ensembl peptide - ENSP00000481376
Ensembl peptide - ENSP00000480482
NCBI entrez gene - 6390     See in Manteia.
OMIM - 185470
RefSeq - NM_003000
RefSeq Peptide - NP_002991
swissprot - A0A087WXX8
swissprot - A0A087WWT1
swissprot - P21912
Ensembl - ENSG00000117118
  
Related genetic diseases (OMIM): 115310 - Paragangliomas 4, 115310
  171300 - Pheochromocytoma, 171300
  606764 - Gastrointestinal stromal tumor, 606764
  606864 - Paraganglioma and gastric stromal sarcoma, 606864
  612359 - Cowden syndrome 2, 612359
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdhbENSDARG00000075768Danio rerio
 si:dkey-31b16.7ENSDARG00000092713Danio rerio
 MRPS16ENSGALG00000041401Gallus gallus
 SdhbENSMUSG00000009863Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001041  2Fe-2S ferredoxin-type iron-sulfur binding domain
 IPR004489  Succinate dehydrogenase/fumarate reductase iron-sulphur protein
 IPR006058  2Fe-2S ferredoxin, iron-sulphur binding site
 IPR009051  Alpha-helical ferredoxin
 IPR012675  Beta-grasp domain superfamily
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain
 IPR017900  4Fe-4S ferredoxin, iron-sulphur binding, conserved site
 IPR025192  Succinate dehydogenase/fumarate reductase N-terminal
 IPR036010  2Fe-2S ferredoxin-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0006105 succinate metabolic process IEA
 biological_processGO:0009060 aerobic respiration TAS
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0022904 respiratory electron transport chain IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEA
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031966 mitochondrial membrane IBA
 cellular_componentGO:0045273 respiratory chain complex II IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008177 succinate dehydrogenase (ubiquinone) activity IEA
 molecular_functionGO:0009055 electron transfer activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048039 ubiquinone binding ISS
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051537 2 iron, 2 sulfur cluster binding IEA
 molecular_functionGO:0051538 3 iron, 4 sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Respiratory electron transport
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000036 Abnormality of the penis 
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 HP:0000093 Proteinuria 
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 HP:0000096 Glomerulosclerosis 
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 HP:0000131 Uterine leiomyoma 
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000221 Furrowed tongue "Accentuation of the grooves on the dorsal surface of the tongue." [pmid:19125428]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000360 Tinnitus "Tinnitus is an auditory perception that can be described as the experience of sound, in the ear or in the head, in the absence of external acoustic stimulation." [Cochrane:ab005233]
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 HP:0000365 Hearing loss 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000519 Congenital cataract "A congenital `cataract` (HP:0000518)." [HPO:probinson]
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 HP:0000526 Aniridia "Congenital absence of the iris." [HPO:curators]
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 HP:0000545 Myopia 
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 HP:0000717 Autism 
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 HP:0000740 Anxiety (with pheochromocytoma) 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000771 Gynecomastia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
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 HP:0000875 Episodic hypertension 
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 HP:0000953 Hyperpigmentation 
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 HP:0000957 Cafe-au-lait spots 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0000980 Pallor 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0000988 Skin rash 
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 HP:0000995 Pigmented nevi "The presence of increased numbers of pigmented nevi, that is, of small, dark spots on the skin. Pigmented nevi are also known as melanocytic nevi or moles." [HPO:curators]
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 HP:0001025 Urticaria 
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 HP:0001028 Hemangiomas "The presence of multiple hemangiomas. A hemangioma is a benign tumor characterized by blood-filled spaces lined by benign endothelial cells. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma (in contrast to a hemangioma with small endothelial spaces, which is called capillary hemangioma)." [HPO:curators]
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 HP:0001048 Cavernous hemangioma "The presence of a cavernous hemangioma. A hemangioma characterized by large endothelial spaces (caverns) is called a cavernous hemangioma." [HPO:curators]
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 HP:0001053 Hypopigmented skin patches 
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 HP:0001067 Neurofibromas 
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 HP:0001069 Hyperhidrosis, episodic 
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 HP:0001095 Hypertensive retinopathy 
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 HP:0001156 Brachydactyly 
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 HP:0001176 Large hands 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001293 Cranial nerve compression 
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 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
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 HP:0001342 Cerebral hemorrhage "A cerebral hemorrhage (or intracerebral hemorrhage, ICH), is a type of intracranial hemorrhage that occurs within the brain tissue itself." [HPO:curators]
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 HP:0001392 Abnormality of the liver 
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 HP:0001482 Subcutaneous nodules 
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 HP:0001508 Failure to thrive 
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 HP:0001605 Vocal cord paralysis 
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 HP:0001618 Dysphonia 
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 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
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 HP:0001649 Tachycardia "A rapid heartrate that exceeds the range of the normal resting heartrate for age." [HPO:curators]
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 HP:0001824 Weight loss 
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 HP:0001903 Anemia 
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 HP:0001920 Renal artery stenosis 
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 HP:0001962 Palpitations 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002018 Nausea 
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 HP:0002019 Constipation 
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 HP:0002027 Abdominal pain 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002331 Headache (with pheochromocytoma) 
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 HP:0002516 Increased intracranial pressure 
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 HP:0002574 Episodic abdominal pain 
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 HP:0002640 Hypertension (with pheochromocytoma) 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002664 Neoplasia "An organ or organ-system abnormality that consists of uncontrolled autonomous cell-proliferation which can occur in any part of the body as a benign or malignant tumour or neoplasm." [HPO:curators]
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 HP:0002666 Pheochromocytoma "Pheochromocytomas (also known as chromaffin tumors) produce, store, and secrete catecholamines. Pheochromocytomas usually originate from the adrenal medulla but may also develop from chromaffin cells in or about sympathetic ganglia. A common symptom of pheochromocytoma is hypertension owing to release of catecholamines." [HPO:curators]
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 HP:0002668 Paragangliomas "A carotid body tumor (also called paraganglionoma or chemodectoma) is a tumor found in the upper neck at the branching of the carotid artery. They arise from the chemoreceptor organ (paraganglion) located in the adventitia of the carotid artery bifurcation." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002858 Meningioma 
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 HP:0002861 Malignant melanoma "A malignant skin tumor of originating from melanocytes, pigment cells normally present in the epidermis and sometimes in the dermis." [HPO:curators]
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 HP:0002864 Paragangliomas, head and neck 
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 HP:0002895 Papillary thyroid carcinoma 
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 HP:0003001 Glomus jugular tumors 
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 HP:0003002 Breast cancer 
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 HP:0003006 Neuroblastoma "Neuroblastoma is a solid tumor that originate in neural crest cells of the sympathetic nervous system. Most neuroblastomas originate in the abdomen, and most abdominal neuroblastomas originate in the adrenal gland. Neuroblastomas can also originate in the thorax, usually in the posterior mediastinum." [HPO:curators]
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 HP:0003072 Hypercalcemia "A level of blood calcium that is higher than normal." [HPO:curators]
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 HP:0003345 Elevated urinary norepinephrine 
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 HP:0003528 Elevated calcitonin 
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 HP:0003574 Positive regitine test 
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 HP:0003581 Onset in adulthood 
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 HP:0003639 Increased urinary epinephrine 
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 HP:0003745 Sporadic 
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 HP:0003829 Incomplete penetrance 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004390 Hamartomatous polyps "Polyp-like protrusions which are histologically hamartomas. These can occur throughout the gastrointestine. Patients with Cowden-Syndrom for example often have multpile hamartomatous gastrointestinal polyps." [HPO:curators]
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 HP:0005214 Intestinal obstruction 
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 HP:0005374 Cellular immunodeficiency 
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 HP:0005584 Renal cell carcinoma "Renal cell carcinoma (also known as hypernephroma) is the most common form of kidney cancer arising from the proximal renal tubule. The tissue of origin for renal cell carcinoma is the proximal renal tubular epithelium. Renal cell carcinoma can be classified as 1) clear cell carcinoma, 2) papillary carcinoma, 3) chromophobe renal carcinoma, and 4) collecting duct carcinoma." [HPO:curators]
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 HP:0005595 Hyperkeratosis, generalized 
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 HP:0006731 Follicular thyroid carcinoma 
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 HP:0006737 Pheochromocytoma, extraadrenal "Pheochromocytoma not originating from the adrenal medulla but from another source such as from chromaffin cells in or about sympathetic ganglia." [HPO:curators]
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 HP:0006748 Pheochromocytoma, adrenal "Pheochromocytoma originating from the adrenal medulla." [HPO:curators]
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 HP:0006753 Increased gastric cancer 
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 HP:0006824 Cranial nerve paralysis 
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 HP:0007378 Gastrointestinal tract tumors 
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 HP:0007400 Irregular hyperpigmentation 
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 HP:0007565 Multiple cafe-au-lait spots 
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 HP:0008629 Pulsatile tinnitus "Pulsatile tinnitus is generally classified a kind of objective tinnitus, meaning that it is not only audible to the patient but also to the examiner on auscultation of the auditory canal and/or of surrounding structures with use of an auscultation tube or stethoscope. Usually, pulsatile tinnitus is heard as a lower pitched thumping or booming, a rougher blowing sound which is coincidental with respiration, or as a clicking, higher pitched rhythmic sensation. Pulsatile tinnitus may be associated with vascular abnormalities such as arterioevenous shunts or glomus tumors or the jugular vein, arterial bruits related to a high-riding carotid artery (close to the auditory areas) or carotid stenosis, or venous abnormalities such as a dehiscent jugular bulb or to hypertension. Finally, in some patients, mechanical abnormalities such a spatulous eustachian tubes, palatomyoclonus (small spasms of muscles in the soft palate area), or idiopathic stapedial muscle spasm may represent the underlying cause of pulsatile tinnitus." [HPO:curators]
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 HP:0008675 Enlarged polycystic ovaries 
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 HP:0009711 Retinal hemangioblastoma "Retinal hemangioblastoma is a benign vascular tumor of the retina without any neoplastic characteristics. They have been called "retinal angiomas" and "retinal hemangiomas" but hemangioblastoma is the preferred term since they are histologically identical to lesions found in the CNS." [HPO:curators]
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 HP:0009720 Adenoma sebaceum "Facial angiofibromas, also known as adenoma sebaceum, are reddish papillary lesions (fibrous skin tumors) that are found around the nose, cheeks, and chin and considered to be characteristic of tuberous sclerosis." [HPO:curators]
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 HP:0010532 Paroxysmal vertigo "Paroxysmal episodes of vertigo." [HPO:curators]
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 HP:0011703 Sinus tachycardia "Inappropriate sinus tachycardia is a nonparoxysmal tachyarrhythmia characterized by an increased resting heart rate (HR) and/or an exaggerated HR response to minimal exertion or a change in body posture. HR is constantly above the physiological range with no appropriate relation to metabolic or physiological demands." [HPO:probinson, pmid:15763524]
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 HP:0011976 Elevated urinary catecholamines "An increased concentration of `catecholamine` (CHEBI:33567) in the urine." [HPO:probinson]
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 HP:0011979 Elevated urinary dopamine "An increased concentration of `dopamine` (CHEBI:18243) in the `urine` (FMA:12274)." [HPO:probinson]
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 HP:0012032 Lipoma "Benign neoplasia derived from lipoblasts or lipocytes of white or brown fat. May be angiomatous or hibernomatous." [MPATH:417]
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 HP:0012062 Bone cyst "A fluid filled cavity that develops with a bone." [HPO:probinson]
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 HP:0012114 Endometrial carcinoma "A carcinoma of the endometrium, the mucous lining of the uterus." [HPO:probinson]
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 HP:0012222 Arachnoid hemangiomatosis "The presence of multiple hemangiomas in the arachnoid." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012733 Macule "A flat, distinct, discolored area of skin less than 1 cm wide that does not involve any change in the thickness or texture of the skin." [HPO:probinson]
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 HP:0012740 Papilloma "A tumor of the skin or mucous membrane with finger-like projections." [HPO:probinson]
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 HP:0025269 Panic attack "A sudden episode of intense fear in a situation in which there is no danger or apparent cause. The panic attack is accompanied by symptoms such as palpitations, sweating and chills or hot flushes. There may be a sensation of dyspnea (being out of breath), chest pain, or abdominal distress. Some indiviudals with panic attacks may experience depersonalization, a fear of going crazy, or a fear of dying." []
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 HP:0030074 Chemodectoma "A usually benign neoplasm originating in the chemoreceptor tissue of the cartodi body, glomus jugulare, glomus tympanicum, aortic bodies, or the female genital tract." []
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 HP:0031284 Flushing "Recurrent episodes of redness of the skin together with a sensation of warmth or burning of the affected areas of skin." []
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 HP:0100242 Sarcoma "The presence of a `sarcoma` (MPATH:551)." [HPO:sdoelken]
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 HP:0100273 Neoplasia of the colon 
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100579 Mucosal telangiectasiae "`Telangiectasia` (HP:0001009) of the mucosa, the mucous membranes which are involved in absorption and secretion that line cavities that are exposed to the external environment and internal organs." [HPO:sdoelken]
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 HP:0100723 Gastrointestinal stroma tumor 
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 HP:0100743 Neoplasm of the rectum 
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 HP:0100749 Chest pain 
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 HP:0100751 Esophageal neoplasm 
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 HP:0100780 Conjunctival hamartomas 
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 HP:0100833 Neoplasm of the small intestine "The presence of a `neoplasm` (MPATH:218) of the small intestine." [HPO:probinson]
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 HP:0200034 skin papules "A circumscribed, solid elevation of skin with no visible fluid, varying in size from a pinhead to less than 10mm in diameter at the widest point." [HPO:SKOEHLER]
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 HP:0200063 Colorectal polyps 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000143252 SDHC / Q99643 / succinate dehydrogenase complex subunit C  / complex
 ENSG00000204370 SDHD / O14521 / succinate dehydrogenase complex subunit D  / complex
 ENSG00000073578 SDHA / P31040 / succinate dehydrogenase complex flavoprotein subunit A  / complex






 

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