ENSGALG00000041401


Gallus gallus

Features
Gene ID: ENSGALG00000041401
  
Biological name :MRPS16
  
Synonyms : 28S ribosomal protein S16, mitochondrial isoform 2 / MRPS16
  
Possible biological names infered from orthology : Mus musculus succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (Sdhb), transcript variant 2, mRNA. / P21912 / Q9CQA3 / SDHB / succinate dehydrogenase complex iron sulfur subunit B
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 183587
Gene end: 196195
  
Corresponding Affymetrix probe sets: Gga.3282.1.S1_s_at (Chicken Array)   Gga.3282.2.S1_a_at (Chicken Array)   Gga.3282.3.S1_at (Chicken Array)   Gga.3282.5.S1_at (Chicken Array)   Gga.4743.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046167
Ensembl peptide - ENSGALP00000047598
Ensembl peptide - ENSGALP00000064180
Ensembl peptide - ENSGALP00000062870
Ensembl peptide - ENSGALP00000062520
Ensembl peptide - ENSGALP00000060310
Ensembl peptide - ENSGALP00000058773
Ensembl peptide - ENSGALP00000056432
Ensembl peptide - ENSGALP00000052583
Ensembl peptide - ENSGALP00000052306
NCBI entrez gene - 100859720     See in Manteia.
NCBI entrez gene - 769996     See in Manteia.
RefSeq - NM_001080875
RefSeq - NM_001278039
RefSeq - NM_001278028
RefSeq - NM_001278027
RefSeq - NM_001278026
RefSeq Peptide - NP_001264968
RefSeq Peptide - NP_001074344
RefSeq Peptide - NP_001264955
RefSeq Peptide - NP_001264956
RefSeq Peptide - NP_001264957
swissprot - A0A1L1RUM2
swissprot - A0A1L1RVL4
swissprot - A0A1L1RZ93
swissprot - E1C907
swissprot - A0A1D5PHM6
swissprot - A0A1D5P4I9
swissprot - A0A1D5PIF0
swissprot - A0A1D5PU30
Ensembl - ENSGALG00000041401
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sdhbENSDARG00000075768Danio rerio
 si:dkey-31b16.7ENSDARG00000092713Danio rerio
 SDHBENSG00000117118Homo sapiens
 SdhbENSMUSG00000009863Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000307  Ribosomal protein S16
 IPR001041  2Fe-2S ferredoxin-type iron-sulfur binding domain
 IPR004489  Succinate dehydrogenase/fumarate reductase iron-sulphur protein
 IPR006058  2Fe-2S ferredoxin, iron-sulphur binding site
 IPR009051  Alpha-helical ferredoxin
 IPR012675  Beta-grasp domain superfamily
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain
 IPR017900  4Fe-4S ferredoxin, iron-sulphur binding, conserved site
 IPR023803  Ribosomal protein S16 domain superfamily
 IPR025192  Succinate dehydogenase/fumarate reductase N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0032543 mitochondrial translation IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane IEA
 cellular_componentGO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IEA
 cellular_componentGO:0005763 mitochondrial small ribosomal subunit IBA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0045273 respiratory chain complex II IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA
 molecular_functionGO:0008177 succinate dehydrogenase (ubiquinone) activity IEA
 molecular_functionGO:0009055 electron transfer activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051537 2 iron, 2 sulfur cluster binding IEA
 molecular_functionGO:0051538 3 iron, 4 sulfur cluster binding IEA
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr