ENSDARG00000075768


Danio rerio

Features
Gene ID: ENSDARG00000075768
  
Biological name :sdhb
  
Synonyms : A5PL98 / sdhb / succinate dehydrogenase complex, subunit B, iron sulfur (Ip)
  
Possible biological names infered from orthology : Mus musculus succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (Sdhb), transcript variant 2, mRNA. / P21912 / Q9CQA3 / succinate dehydrogenase complex iron sulfur subunit B
  
Species: Danio rerio
  
Chr. number: 22
Strand: 1
Band:
Gene start: 11395
Gene end: 18224
  
Corresponding Affymetrix probe sets: Dr.19902.3.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000062263
NCBI entrez gene - 562149     See in Manteia.
swissprot - A5PL98
ZFIN ID - ZDB-GENE-030131-8005
Ensembl - ENSDARG00000075768
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MRPS16ENSGALG00000041401Gallus gallus
 SDHBENSG00000117118Homo sapiens
 SdhbENSMUSG00000009863Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-31b16.7 / SDHB* / Q9CQA3* / P21912* / succinate dehydrogenase complex iron sulfur subunit B* / Mus musculus succinate dehydrogenase complex, subunit B, iron sulfur (Ip) (Sdhb), tran...ENSDARG0000009271334


Protein motifs (from Interpro)
Interpro ID Name
 IPR001041  2Fe-2S ferredoxin-type iron-sulfur binding domain
 IPR004489  Succinate dehydrogenase/fumarate reductase iron-sulphur protein
 IPR006058  2Fe-2S ferredoxin, iron-sulphur binding site
 IPR009051  Alpha-helical ferredoxin
 IPR012675  Beta-grasp domain superfamily
 IPR017896  4Fe-4S ferredoxin-type, iron-sulphur binding domain
 IPR017900  4Fe-4S ferredoxin, iron-sulphur binding, conserved site
 IPR025192  Succinate dehydogenase/fumarate reductase N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0009060 aerobic respiration IBA
 biological_processGO:0022904 respiratory electron transport chain IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane ISS
 cellular_componentGO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031966 mitochondrial membrane IBA
 molecular_functionGO:0008177 succinate dehydrogenase (ubiquinone) activity IEA
 molecular_functionGO:0009055 electron transfer activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048039 ubiquinone binding ISS
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA
 molecular_functionGO:0051537 2 iron, 2 sulfur cluster binding ISS
 molecular_functionGO:0051538 3 iron, 4 sulfur cluster binding ISS
 molecular_functionGO:0051539 4 iron, 4 sulfur cluster binding ISS


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000016721 sdha / Q7ZVF3 / succinate dehydrogenase complex, subunit A, flavoprotein (Fp) / Q8K2B3* / P31040* / succinate dehydrogenase complex flavoprotein subunit A* / Succinate dehydrogenase [ubiqui...  / complex
 ENSDARG00000030139 sdhdb / Q68FN7 / succinate dehydrogenase complex, subunit D, integral membrane protein b / SDHD* / Q9CXV1* / O14521* / AP002884.3* / succinate dehydrogenase complex subunit D* / succinate d...  / complex
 ENSDARG00000055712 sdhda / Q6DGM2 / succinate dehydrogenase complex, subunit D, integral membrane protein a / SDHD* / Q9CXV1* / O14521* / AP002884.3* / succinate dehydrogenase complex subunit D* / succinate d...  / complex
 ENSDARG00000038608 sdhc / succinate dehydrogenase complex, subunit C, integral membrane protein / Q99643* / Q9CZB0* / succinate dehydrogenase complex subunit C*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr