ENSDARG00000030139


Danio rerio

Features
Gene ID: ENSDARG00000030139
  
Biological name :sdhdb
  
Synonyms : Q68FN7 / sdhdb / succinate dehydrogenase complex, subunit D, integral membrane protein b
  
Possible biological names infered from orthology : AP002884.3 / O14521 / Q9CXV1 / SDHD / succinate dehydrogenase complex subunit D / succinate dehydrogenase complex, subunit D, integral membrane protein
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 21684435
Gene end: 21692630
  
Corresponding Affymetrix probe sets: Dr.9285.1.S1_at (Zebrafish Array)   NM_001004004_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000039864
NCBI entrez gene - 445500     See in Manteia.
RefSeq - NM_001004004
RefSeq Peptide - NP_001004004
swissprot - Q68FN7
ZFIN ID - ZDB-GENE-040822-17
Ensembl - ENSDARG00000030139
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SDHDENSGALG00000007878Gallus gallus
 AP002884.3ENSG00000255292Homo sapiens
 SDHDENSG00000204370Homo sapiens
 SdhdENSMUSG00000000171Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
sdhda / Q6DGM2 / succinate dehydrogenase complex, subunit D, integral membrane protein a / SDHD* / Q9CXV1* / O14521* / AP002884.3* / succinate dehydrogenase complex subunit D* / succinate d...ENSDARG0000005571253


Protein motifs (from Interpro)
Interpro ID Name
 IPR007992  Succinate dehydrogenase [ubiquinone] cytochrome b small subunit, CybS
 IPR034804  Fumarate reductase/succinate dehydrogenase, transmembrane subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IBA
 biological_processGO:0006121 mitochondrial electron transport, succinate to ubiquinone IBA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005740 mitochondrial envelope IEA
 cellular_componentGO:0005743 mitochondrial inner membrane ISS
 cellular_componentGO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008177 succinate dehydrogenase (ubiquinone) activity IBA
 molecular_functionGO:0020037 heme binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0048039 ubiquinone binding IBA


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000016721 sdha / Q7ZVF3 / succinate dehydrogenase complex, subunit A, flavoprotein (Fp) / Q8K2B3* / P31040* / succinate dehydrogenase complex flavoprotein subunit A* / Succinate dehydrogenase [ubiqui...  / complex
 ENSDARG00000075768 sdhb / A5PL98 / succinate dehydrogenase complex, subunit B, iron sulfur (Ip) / P21912* / succinate dehydrogenase complex iron sulfur subunit B*  / complex
 ENSDARG00000038608 sdhc / succinate dehydrogenase complex, subunit C, integral membrane protein / Q99643* / Q9CZB0* / succinate dehydrogenase complex subunit C*  / complex






 

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