ENSG00000090674


Homo sapiens

Features
Gene ID: ENSG00000090674
  
Biological name :MCOLN1
  
Synonyms : MCOLN1 / mucolipin 1 / Q9GZU1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: p13.2
Gene start: 7522626
Gene end: 7534009
  
Corresponding Affymetrix probe sets: 219952_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000469074
Ensembl peptide - ENSP00000472176
Ensembl peptide - ENSP00000264079
NCBI entrez gene - 57192     See in Manteia.
OMIM - 605248
RefSeq - NM_020533
RefSeq Peptide - NP_065394
swissprot - Q9GZU1
swissprot - M0QXD0
swissprot - M0R1X7
Ensembl - ENSG00000090674
  
Related genetic diseases (OMIM): 252650 - Mucolipidosis IV, 252650
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 mcoln1aENSDARG00000002285Danio rerio
 mcoln1bENSDARG00000058848Danio rerio
 Mcoln1ENSMUSG00000004567Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MCOLN3 / Q8TDD5 / mucolipin 3ENSG0000005573253
MCOLN2 / Q8IZK6 / mucolipin 2ENSG0000015389845


Protein motifs (from Interpro)
Interpro ID Name
 IPR013122  Polycystin cation channel, PKD1/PKD2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002250 adaptive immune response IEA
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006812 cation transport NAS
 biological_processGO:0006816 calcium ion transport IEA
 biological_processGO:0019722 calcium-mediated signaling IEA
 biological_processGO:0033572 transferrin transport TAS
 biological_processGO:0034755 iron ion transmembrane transport IEA
 biological_processGO:0051209 release of sequestered calcium ion into cytosol IEA
 biological_processGO:0051289 protein homotetramerization IEA
 biological_processGO:0070588 calcium ion transmembrane transport TAS
 biological_processGO:0071277 cellular response to calcium ion IEA
 biological_processGO:0071467 cellular response to pH IEA
 biological_processGO:0097352 autophagosome maturation IEA
 biological_processGO:0098655 cation transmembrane transport IEA
 cellular_componentGO:0001891 phagocytic cup IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane NAS
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043235 receptor complex IDA
 molecular_functionGO:0005261 cation channel activity NAS
 molecular_functionGO:0005262 calcium channel activity TAS
 molecular_functionGO:0005381 iron ion transmembrane transporter activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008289 lipid binding IEA
 molecular_functionGO:0072345 NAADP-sensitive calcium-release channel activity IEA
 molecular_functionGO:0097682 intracellular phosphatidylinositol-3,5-bisphosphate-sensitive cation channel activity IEA
 molecular_functionGO:0099604 ligand-gated calcium channel activity IDA


Pathways (from Reactome)
Pathway description
TRP channels
Transferrin endocytosis and recycling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000546 Retinal degeneration 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000654 Decreased electroretinogram (ERG) 
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 HP:0000691 Microdontia 
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 HP:0000982 Palmoplantar keratoderma 
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001344 Absent speech development 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001438 Abnormality of the abdomen "Abnormality of the abdomen ("belly"), that is, the part of the body between the pelvis and the thorax." [HPO:curators]
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 HP:0002353 EEG abnormalities "Abnormality observed by electroencephalogram (EEG), which is used to record of the brain s spontaneous electrical activity from multiple electrodes placed on the scalp." [HPO:curators]
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 HP:0002510 Spastic tetraplegia "Spastic paralysis affecting all four limbs." [HPO:curators]
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 HP:0002816 Genu recurvatum 
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0004345 Abnormality of ganglioside metabolism 
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0005105 Abnormal nasal morphology 
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 HP:0006989 Dysplastic corpus callosum 
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 HP:0007266 Dysmyelination of the brain 
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 HP:0007281 Developmental arrest 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007759 Corneal opacities, not impairing visual acuity 
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 HP:0007957 Variable degree of corneal opacities 
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 HP:0010318 Aplasia/Hypoplasia of the abdominal wall musculature "Absence or underdevelopment of the abdominal wall musculature." [HPO:curators]
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 HP:0011020 Abnormality of mucopolysaccharide metabolism 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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