ENSG00000091137


Homo sapiens

Features
Gene ID: ENSG00000091137
  
Biological name :SLC26A4
  
Synonyms : O43511 / SLC26A4 / solute carrier family 26 member 4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.3
Gene start: 107660635
Gene end: 107717809
  
Corresponding Affymetrix probe sets: 206529_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000394760
Ensembl peptide - ENSP00000494344
Ensembl peptide - ENSP00000494017
Ensembl peptide - ENSP00000265715
NCBI entrez gene - 5172     See in Manteia.
OMIM - 605646
RefSeq - XM_005250425
RefSeq - NM_000441
RefSeq - XM_017012318
RefSeq Peptide - NP_000432
swissprot - O43511
swissprot - C9JQG1
Ensembl - ENSG00000091137
  
Related genetic diseases (OMIM): 274600 - Pendred syndrome, 274600
  600791 - Deafness, autosomal recessive 4, with enlarged vestibular aqueduct, 600791
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc26a4ENSDARG00000069431Danio rerio
 SLC26A4ENSGALG00000007998Gallus gallus
 Q9R155ENSMUSG00000020651Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P40879 / SLC26A3 / solute carrier family 26 member 3ENSG0000009113845
Q9BXS9 / SLC26A6 / solute carrier family 26 member 6ENSG0000022569736
P58743 / SLC26A5 / solute carrier family 26 member 5ENSG0000017061535
Q7LBE3 / SLC26A9 / solute carrier family 26 member 9ENSG0000017450233
P50443 / SLC26A2 / solute carrier family 26 member 2ENSG0000015585029
Q9H2B4 / SLC26A1 / solute carrier family 26 member 1ENSG0000014521728
Q96RN1 / SLC26A8 / solute carrier family 26 member 8ENSG0000011205328
Q8TE54 / SLC26A7 / solute carrier family 26 member 7ENSG0000014760625
Q8NG04 / SLC26A10 / solute carrier family 26 member 10ENSG0000013550222


Protein motifs (from Interpro)
Interpro ID Name
 IPR001902  SLC26A/SulP transporter
 IPR002645  STAS domain
 IPR011547  SLC26A/SulP transporter domain
 IPR018045  Sulphate anion transporter, conserved site
 IPR030285  Pendrin
 IPR036513  STAS domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport TAS
 biological_processGO:0006885 regulation of pH IEA
 biological_processGO:0007605 sensory perception of sound TAS
 biological_processGO:0008272 sulfate transport IEA
 biological_processGO:0015698 inorganic anion transport TAS
 biological_processGO:0015701 bicarbonate transport IBA
 biological_processGO:0015705 iodide transport IEA
 biological_processGO:0019532 oxalate transport IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0042391 regulation of membrane potential IBA
 biological_processGO:0051453 regulation of intracellular pH IBA
 biological_processGO:0055085 transmembrane transport IEA
 biological_processGO:0098656 anion transmembrane transport IEA
 biological_processGO:1902358 sulfate transmembrane transport IEA
 biological_processGO:1902476 chloride transmembrane transport IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031526 brush border membrane IEA
 cellular_componentGO:0070062 extracellular exosome IDA
 molecular_functionGO:0005254 chloride channel activity IBA
 molecular_functionGO:0008271 secondary active sulfate transmembrane transporter activity IEA
 molecular_functionGO:0015106 bicarbonate transmembrane transporter activity IBA
 molecular_functionGO:0015108 chloride transmembrane transporter activity TAS
 molecular_functionGO:0015111 iodide transmembrane transporter activity TAS
 molecular_functionGO:0015116 sulfate transmembrane transporter activity IEA
 molecular_functionGO:0015301 anion:anion antiporter activity IBA
 molecular_functionGO:0019531 oxalate transmembrane transporter activity IBA


Pathways (from Reactome)
Pathway description
Multifunctional anion exchangers
Defective SLC26A4 causes Pendred syndrome (PDS)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000158 Macroglossia "Increased length and width of the tongue." [pmid:19125428]
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000376 Mondini malformation "The normal cochlea has two and one half turns. Mondini malformation refers to the development of only one and a half turns of the cochlea. The defect usually occurs in the seventh week of gestation after development of the basal turn. There is incomplete partition with resulting confluency of the middle and apical turns." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000821 Hypothyroidism 
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 HP:0000843 Hyperparathyroidism 
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 HP:0000853 Goiter "An enlargement of the thyroid gland." [HPO:curators]
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 HP:0000952 Jaundice "Yellow pigmentation of the skin or sclera due to bilirubin, which in turn is the result of increased bilirubin concentration in the bloodstream." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001751 Vestibular dysfunction 
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 HP:0001939 Metabolism abnormality 
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 HP:0002019 Constipation 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002167 Neurological speech impairment 
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 HP:0002321 Vertigo "An abnormal sensation of spinning while the body is actually stationary." [HPO:curators]
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 HP:0002777 Tracheal stenosis 
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 HP:0002890 Thyroid carcinoma 
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 HP:0003270 Abdominal distention "Enlargement or distention of the abdomen, which can be a secondary feature associated with a number of conditions such as bowel obstruction." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005990 Hypoplastic thyroid 
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 HP:0008191 Athyroidal hypothyroidism 
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 HP:0008223 Compensated hypothyroidism 
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 HP:0008527 Congenital sensorineural hearing loss 
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 HP:0008554 Cochlear malformation "A cochlear malformation may include a membranous abnormality, a bony abnormality, or a combination of the two." [HPO:curators]
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 HP:0008586 Hypoplastic cochlea 
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011387 Enlarged vestibular aqueduct "Increased size of the vestibular aqueduct." [DDD:mbitner-glidicz]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0100786 Hypersomnia 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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