ENSG00000101052


Homo sapiens

Features
Gene ID: ENSG00000101052
  
Biological name :IFT52
  
Synonyms : IFT52 / intraflagellar transport 52 / Q9Y366
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q13.12
Gene start: 43590931
Gene end: 43647296
  
Corresponding Affymetrix probe sets: 218709_s_at (Human Genome U133 Plus 2.0 Array)   233532_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000362121
Ensembl peptide - ENSP00000362130
NCBI entrez gene - 51098     See in Manteia.
OMIM - 617094
RefSeq - NM_001323579
RefSeq - NM_001323580
RefSeq - NM_001323581
RefSeq - NM_016004
RefSeq - XM_017027863
RefSeq - NM_001303458
RefSeq - NM_001303459
RefSeq - NM_001323578
RefSeq Peptide - NP_001290387
RefSeq Peptide - NP_001310507
RefSeq Peptide - NP_001310508
RefSeq Peptide - NP_001310509
RefSeq Peptide - NP_001310510
RefSeq Peptide - NP_057088
RefSeq Peptide - NP_001290388
swissprot - Q9Y366
Ensembl - ENSG00000101052
  
Related genetic diseases (OMIM): 617102 - Short-rib thoracic dysplasia 16 with or without polydactyly, 617102
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift52ENSDARG00000045025Danio rerio
 IFT52ENSGALG00000003523Gallus gallus
 Ift52ENSMUSG00000017858Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019196  ABC-type uncharacterised transport system
 IPR029062  Class I glutamine amidotransferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007368 determination of left/right symmetry IEA
 biological_processGO:0009953 dorsal/ventral pattern formation IEA
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035720 intraciliary anterograde transport IMP
 biological_processGO:0035735 intraciliary transport involved in cilium assembly TAS
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IEA
 biological_processGO:0060271 cilium assembly IMP
 biological_processGO:0070613 regulation of protein processing IEA
 biological_processGO:1905515 non-motile cilium assembly IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005814 centriole IEA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030992 intraciliary transport particle B ISS
 cellular_componentGO:0031514 motile cilium ISS
 cellular_componentGO:0032391 photoreceptor connecting cilium IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0044292 dendrite terminus IEA
 cellular_componentGO:0097542 ciliary tip TAS
 cellular_componentGO:0097546 ciliary base IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding ISS


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000232 Everted lower lip 
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 HP:0000268 Dolichocephaly 
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 HP:0000269 Prominent occiput 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000293 Full cheeks 
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000506 Telecanthus "An abnormally increased distance between the medial canthi (angle between eyelids) of the eyelids." [HPO:curators]
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000601 Hypotelorism 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000668 Hypodontia "Hypodontia describes a situation when there are fewer than the normal number of teeth, whereby 6 teeth or fewer teeth are missing (oligodontia refers to the condition of missing more than 6 teeth and the congenital absence of all teeth is called anodontia)." [HPO:curators]
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 HP:0000670 Carious teeth 
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 HP:0000679 Taurodontia 
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 HP:0000682 Abnormality of dental enamel "An abnormality of the dental enamel, which is the external layer of the teeth, being a highly mineralized substance consisting primarily of hydroxylapatite." [HPO:curators]
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 HP:0000691 Microdontia 
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000774 Narrow chest 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000940 Abnormality of the diaphyses 
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 HP:0000944 Abnormality of the metaphyses 
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 HP:0001156 Brachydactyly 
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 HP:0001231 Abnormality of the fingernails "An abnormality of the `fingernails` (FMA:54327)." [HPO:probinson]
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 HP:0001270 Motor retardation 
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001852 Gap between first and second toes "The presence of a larger than normal gap between the first and second toes related to medial displacement of the first toe." [HPO:curators]
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002098 Respiratory distress 
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 HP:0003180 Flat acetabular roofs 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005280 Depressed nasal root and bridge 
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 HP:0005692 Joint hyperflexibility 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0008070 Sparse hair 
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 HP:0008388 Abnormality of the toenails 
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 HP:0008499 High-grade hypermetropia 
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 HP:0008905 Rhizomelic short stature 
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 HP:0009826 Hypoplasia involving bones of the extremities 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010230 Cone-shaped epiphyses of the phalanges of the hand "A cone-shaped appearance of the epiphyses of the fingers of the hand, producing a ball-in-a-socket appearance. The related entity angel-shaped epiphysis refers to a pronounced cone-shaped epiphysis in combination with a pseudoepiphysis at the distal end of a phalanx." [HPO:curators]
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 HP:0010743 Hypoplasia of the metatarsal bones 
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 HP:0011800 Midface retrusion "Posterior positions and/or vertical shortening of the infraorbital and perialar regions, or increased concavity of the face and/or reduced nasolabial angle." [DDD:jclayton-smith]
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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