ENSMUSG00000017858


Mus musculus

Features
Gene ID: ENSMUSG00000017858
  
Biological name :Ift52
  
Synonyms : Ift52 / Intraflagellar transport / Q62559
  
Possible biological names infered from orthology : intraflagellar transport 52 / Q9Y366
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H2
Gene start: 163017354
Gene end: 163046141
  
Corresponding Affymetrix probe sets: 10478341 (MoGene1.0st)   1434696_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000018002
Ensembl peptide - ENSMUSP00000121943
NCBI entrez gene - 245866     See in Manteia.
MGI - MGI:2387217
RefSeq - XM_006499541
RefSeq - NM_172150
RefSeq Peptide - NP_001343451
RefSeq Peptide - NP_742162
swissprot - Q62559
swissprot - F6RBL8
Ensembl - ENSMUSG00000017858
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ift52ENSDARG00000045025Danio rerio
 IFT52ENSGALG00000003523Gallus gallus
 IFT52ENSG00000101052Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019196  ABC-type uncharacterised transport system
 IPR029062  Class I glutamine amidotransferase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IMP
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0007224 smoothened signaling pathway IMP
 biological_processGO:0007368 determination of left/right symmetry IMP
 biological_processGO:0009953 dorsal/ventral pattern formation IMP
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0035720 intraciliary anterograde transport IEA
 biological_processGO:0042073 intraciliary transport IC
 biological_processGO:0042733 embryonic digit morphogenesis IMP
 biological_processGO:0050680 negative regulation of epithelial cell proliferation IMP
 biological_processGO:0060271 cilium assembly IEA
 biological_processGO:0070613 regulation of protein processing IMP
 biological_processGO:1905515 non-motile cilium assembly IMP
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005814 centriole IDA
 cellular_componentGO:0005929 cilium TAS
 cellular_componentGO:0030992 intraciliary transport particle B IDA
 cellular_componentGO:0032391 photoreceptor connecting cilium IDA
 cellular_componentGO:0036064 ciliary basal body ISO
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0044292 dendrite terminus IDA
 cellular_componentGO:0097542 ciliary tip IDA
 cellular_componentGO:0097546 ciliary base IDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Hedgehog off state
Intraflagellar transport
Hedgehog on state


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0011098 complete embryonic lethality during organogenesis "death of all organisms of a given genotype in a population between embryo turning and the completion of organogenesis (Mus: E9 to less than E14)" [MGI:csmith]
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Allelic Composition: Hsp90aa1Tg(Tyr)2396BOve/Hsp90aa1Tg(Tyr)2396BOve
Genetic Background: FVB/N-Hsp90aa1Tg(Tyr)2396BOve

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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