ENSG00000101365


Homo sapiens

Features
Gene ID: ENSG00000101365
  
Biological name :IDH3B
  
Synonyms : IDH3B / isocitrate dehydrogenase 3 (NAD(+)) beta / O43837
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: -1
Band: p13
Gene start: 2658395
Gene end: 2664219
  
Corresponding Affymetrix probe sets: 201509_at (Human Genome U133 Plus 2.0 Array)   210014_x_at (Human Genome U133 Plus 2.0 Array)   210418_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000370223
Ensembl peptide - ENSP00000487187
Ensembl peptide - ENSP00000485997
Ensembl peptide - ENSP00000484922
Ensembl peptide - ENSP00000482773
Ensembl peptide - ENSP00000370232
NCBI entrez gene - 3420     See in Manteia.
OMIM - 604526
RefSeq - XM_005260716
RefSeq - NM_001258384
RefSeq - NM_001330763
RefSeq - NM_006899
RefSeq - NM_174855
RefSeq Peptide - NP_008830
RefSeq Peptide - NP_001245313
RefSeq Peptide - NP_001317692
RefSeq Peptide - NP_777280
swissprot - A0A0D9SET9
swissprot - A0A087X2E5
swissprot - O43837
swissprot - A0A0D9SG66
swissprot - A0A087WZN1
Ensembl - ENSG00000101365
  
Related genetic diseases (OMIM): 612572 - Retinitis pigmentosa 46, 612572
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 idh3bENSDARG00000044753Danio rerio
 Idh3bENSMUSG00000027406Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
IDH3G / P51553 / isocitrate dehydrogenase 3 (NAD(+)) gammaENSG0000006782949


Protein motifs (from Interpro)
Interpro ID Name
 IPR004434  Isocitrate dehydrogenase NAD-dependent
 IPR019818  Isocitrate/isopropylmalate dehydrogenase, conserved site
 IPR024084  Isopropylmalate dehydrogenase-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0006102 isocitrate metabolic process TAS
 biological_processGO:0006103 2-oxoglutarate metabolic process IEA
 biological_processGO:0006734 NADH metabolic process IEA
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0004449 isocitrate dehydrogenase (NAD+) activity IEA
 molecular_functionGO:0009055 electron transfer activity TAS
 molecular_functionGO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEA
 molecular_functionGO:0051287 NAD binding IEA


Pathways (from Reactome)
Pathway description
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000505 Impaired vision 
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000543 Pale optic disks 
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000654 Decreased electroretinogram (ERG) 
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001133 Constricted visual fields 
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 HP:0001249 Mental retardation 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0007843 Attenuation of retinal blood vessels 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008736 Hypoplasia of penis 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166411 IDH3A / P50213 / isocitrate dehydrogenase 3 (NAD(+)) alpha  / complex
 ENSG00000067829 IDH3G / P51553 / isocitrate dehydrogenase 3 (NAD(+)) gamma  / complex






 

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