ENSG00000103043


Homo sapiens

Features
Gene ID: ENSG00000103043
  
Biological name :VAC14
  
Synonyms : Q08AM6 / VAC14 / Vac14, PIKFYVE complex component
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q22.2
Gene start: 70687439
Gene end: 70801161
  
Corresponding Affymetrix probe sets: 216407_at (Human Genome U133 Plus 2.0 Array)   216501_at (Human Genome U133 Plus 2.0 Array)   218169_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000463485
Ensembl peptide - ENSP00000457809
Ensembl peptide - ENSP00000477536
Ensembl peptide - ENSP00000261776
Ensembl peptide - ENSP00000439284
Ensembl peptide - ENSP00000454650
Ensembl peptide - ENSP00000455731
NCBI entrez gene - 55697     See in Manteia.
OMIM - 604632
RefSeq - XM_017023442
RefSeq - NM_001351157
RefSeq - NM_018052
RefSeq - XM_005256038
RefSeq - XM_005256041
RefSeq - XM_011523223
RefSeq - XM_011523224
RefSeq - XM_011523225
RefSeq - XM_017023441
RefSeq Peptide - NP_001338086
RefSeq Peptide - NP_060522
swissprot - H3BUU8
swissprot - J3QLC3
swissprot - H3BN23
swissprot - A0A087WT26
swissprot - Q08AM6
swissprot - H3BQD9
Ensembl - ENSG00000103043
  
Related genetic diseases (OMIM): 617054 - Striatonigral degeneration, childhood-onset, 617054
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vac14ENSDARG00000014303Danio rerio
 VAC14ENSGALG00000002458Gallus gallus
 Vac14ENSMUSG00000010936Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR021841  Vacuolar protein 14 C-terminal Fig4-binding domain
 IPR026825  Vacuole morphology and inheritance protein 14
 IPR032878  Vacuole morphology and inheritance protein 14, Fab1-binding region


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006661 phosphatidylinositol biosynthetic process IEA
 biological_processGO:0007165 signal transduction NAS
 biological_processGO:0016032 viral process IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031090 organelle membrane IEA
 cellular_componentGO:0031901 early endosome membrane TAS
 cellular_componentGO:0031902 late endosome membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0070772 PAS complex IEA
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the Golgi membrane
Synthesis of PIPs at the early endosome membrane
Synthesis of PIPs at the late endosome membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
Show

 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
Show

 HP:0000054 Micropenis 
Show

 HP:0000059 Hypoplastic labia majora 
Show

 HP:0000162 Glossoptosis 
Show

 HP:0000188 Short upper lip 
Show

 HP:0000216 Broad secondary alveolar ridge 
Show

 HP:0000233 Thin vermillion border 
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000268 Dolichocephaly 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000322 Short philtrum 
Show

 HP:0000331 Small chin 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
Show

 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
Show

 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
Show

 HP:0000520 Proptosis 
Show

 HP:0000582 Upslanting palpebral fissures 
Show

 HP:0000647 Sclerocornea 
Show

 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
Show

 HP:0000750 Impaired language development 
Show

 HP:0000773 Short ribs 
Show

 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
Show

 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
Show

 HP:0001182 Tapered fingers 
Show

 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
Show

 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
Show

 HP:0001276 Hypertonia 
Show

 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
Show

 HP:0001321 Cerebellar hypoplasia 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0001525 Severe failure to thrive 
Show

 HP:0001561 Polyhydramnios 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
Show

 HP:0001638 Cardiomyopathy 
Show

 HP:0001640 Cardiomegaly 
Show

 HP:0001789 Hydrops fetalis 
Show

 HP:0001838 Vertical talus 
Show

 HP:0001840 Metatarsus varus "Metatarsus varus (adductus) is one of the most common foot deformities, that is defined as a transverse plane deformity in Lisfranc s (tarsometatarsal) joints in which the metatarsals are deviated medially. The relationship between talus and calcaneus is normal. On inspection the toes angle abruptly towards the midline, creating a C-shaped lateral foot border with a prominent styloid process of the 5th metatarsal. The result is that the forefoot is twisted inwards relative to the heel, so that the sole faces the midline." [HPO:curators]
Show

 HP:0001920 Renal artery stenosis 
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002021 Pyloric stenosis 
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002139 Arrhinencephaly 
Show

 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
Show

 HP:0002307 Drooling 
Show

 HP:0002317 Unsteady gait 
Show

 HP:0002376 Developmental regression 
Show

 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
Show

 HP:0002696 Abnormality of the parietal bone "Any abnormality of the parietal bones of the skull." [HPO:curators]
Show

 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
Show

 HP:0002827 Dislocated hips 
Show

 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
Show

 HP:0003676 Progressive disorder 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
Show

 HP:0004993 slender long bones with narrow diaphyses 
Show

 HP:0005793 Absent/hypoplastic distal phalanges of hands and feet 
Show

 HP:0005819 Abnormally short and broad middle phalanges 
Show

 HP:0005989 Redundant neck skin 
Show

 HP:0006323 Premature deciduous tooth loss 
Show

 HP:0006628 Absent sternal ossification 
Show

 HP:0006709 Aplasia/Hypoplasia of the nipples 
Show

 HP:0006710 Aplasia/Hypoplasia of the clavicles "Absence or underdevelopment of the clavicles (collar bones)." [HPO:curators]
Show

 HP:0006713 Aplasia/Hypoplasia of the scapulae 
Show

 HP:0006957 Loss of ability to walk 
Show

 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
Show

 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
Show

 HP:0008386 Aplasia/Hypoplasia of the nails 
Show

 HP:0008665 Hypertrophic clitoris 
Show

 HP:0008897 Growth retardation, progressive 
Show

 HP:0008935 Hypotonia, neonatal, generalized 
Show

 HP:0009777 Aplasia of the thumb "Absent thumb." [HPO:curators]
Show

 HP:0009881 Aplasia of the distal phalanges of the hand 
Show

 HP:0010035 Aplasia of the 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
Show

 HP:0010067 Aplasia/Hypoplasia of the 1st metatarsal 
Show

 HP:0010102 Aplasia of the distal phalanx of the hallux 
Show

 HP:0010107 Hypoplastic/small proximal phalanx of the hallux 
Show

 HP:0010537 Wide cranial sutures "An abnormally increased width of the cranial sutures." [HPO:curators]
Show

 HP:0010880 Increased nuchal translucency "The presence of an abnormally large hypoechoic space in the posterior fetal neck (usually detected on prenatal ultrasound examination)." [HPO:probinson, pmid:12751779]
Show

 HP:0011061 Abnormality of dental structure "An abnormality of the structure or composition of the teeth." [HPO:ibailleulforestier]
Show

 HP:0011451 Congenital microcephaly "Microcephaly (HP:0000252) that is present already at the time of birth." [HPO:probinson]
Show

 HP:0012179 Craniofacial dystonia "A form of focal dystonia affecting the face, head or neck muscles." [HPO:probinson]
Show

 HP:0012294 Abnormality of the occipital bone "Abnormality of the `occipital bone` (FMA:52735) of the skull." [HPO:probinson]
Show

 HP:0012809 Narrow nasal base "Decreased distance between the attachments of the alae nasi to the face." [HPO:probinson, pmid:19152422]
Show

 HP:0030816 Gingival recession "The loss of gum tissue. The result is that gum tissue is recessed and its position on the tooth is lowered, exposing the roots of the teeth." []
Show

 HP:0040111 Bilateral external ear deformity 
Show

 HP:0040163 Abnormal pelvis bone morphology 
Show

 HP:0045075 Sparse eyebrow "Decreased density/number of eyebrow hairs." [HPO:skoehler]
Show

 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000112367 FIG4 / Q92562 / FIG4 phosphoinositide 5-phosphatase  / complex
 ENSG00000115020 Q9Y2I7 / PIKFYVE / phosphoinositide kinase, FYVE-type zinc finger containing  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr