ENSG00000112367


Homo sapiens

Features
Gene ID: ENSG00000112367
  
Biological name :FIG4
  
Synonyms : FIG4 / FIG4 phosphoinositide 5-phosphatase / Q92562
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: q21
Gene start: 109691312
Gene end: 109825428
  
Corresponding Affymetrix probe sets: 203656_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000357937
Ensembl peptide - ENSP00000405660
Ensembl peptide - ENSP00000412156
Ensembl peptide - ENSP00000230124
Ensembl peptide - ENSP00000396566
NCBI entrez gene - 9896     See in Manteia.
OMIM - 609390
RefSeq - XM_017011593
RefSeq - NM_014845
RefSeq - XM_011536281
RefSeq - XM_017011591
RefSeq - XM_017011592
RefSeq Peptide - NP_055660
swissprot - Q5TCS5
swissprot - Q92562
swissprot - H0Y6G7
swissprot - Q5JRV4
swissprot - Q5TCS4
Ensembl - ENSG00000112367
  
Related genetic diseases (OMIM): 216340 - Yunis-Varon syndrome, 216340
  611228 - Charcot-Marie-Tooth disease, type 4J, 611228
  612577 - Amyotrophic lateral sclerosis 11, 612577
  612691 - ?Polymicrogyria, bilateral temporooccipital, 612691
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 FIG4ENSDARG00000107912Danio rerio
 FIG4ENSGALG00000015070Gallus gallus
 Fig4ENSMUSG00000038417Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002013  SAC domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006661 phosphatidylinositol biosynthetic process TAS
 biological_processGO:0007033 vacuole organization IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0031642 negative regulation of myelination IEA
 biological_processGO:0032288 myelin assembly IEA
 biological_processGO:0036092 phosphatidylinositol-3-phosphate biosynthetic process IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0046488 phosphatidylinositol metabolic process IEA
 biological_processGO:0048666 neuron development IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005811 lipid droplet IDA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031901 early endosome membrane TAS
 cellular_componentGO:0031902 late endosome membrane TAS
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0055037 recycling endosome IEA
 molecular_functionGO:0004438 phosphatidylinositol-3-phosphatase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0034593 phosphatidylinositol bisphosphate phosphatase activity IEA
 molecular_functionGO:0042578 phosphoric ester hydrolase activity IEA
 molecular_functionGO:0043812 phosphatidylinositol-4-phosphate phosphatase activity IEA
 molecular_functionGO:0043813 phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity TAS


Pathways (from Reactome)
Pathway description
Synthesis of PIPs at the Golgi membrane
Synthesis of PIPs at the early endosome membrane
Synthesis of PIPs at the late endosome membrane


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000047 Hypospadias "Displacement of the urethral opening on the ventral (inferior) surface of the penis." [HPO:curators]
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 HP:0000054 Micropenis 
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 HP:0000059 Hypoplastic labia majora 
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 HP:0000162 Glossoptosis 
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 HP:0000188 Short upper lip 
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 HP:0000216 Broad secondary alveolar ridge 
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000233 Thin vermillion border 
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 HP:0000238 Hydrocephalus 
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 HP:0000239 Large fontanelles "In newborns, the two frontal bones, two parietal bones, and one occipital bone are joined by fibrous sutures, which form a small posterior fontanelle, and a larger, diamond-shaped anterior fontanelle. These regions allow for the skull to pass the birth canal and for later growth. The fontanelles gradually ossify, whereby the posterior fontanelle usually closes by eight weeks and the anterior fontanelle by the 9th to 16th month of age. Large fontanelles are diagnosed if the fontanelles are larger than age-dependent norms." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000268 Dolichocephaly 
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000331 Small chin 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000348 High forehead "An abnormally increased height of the forehead." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000385 Hypoplastic ear lobes 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000464 Abnormality of the neck 
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000520 Proptosis 
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 HP:0000535 Sparse eyebrows 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000647 Sclerocornea 
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 HP:0000653 Sparse eyelashes "Decreased density/number of eyelashes." [pmid:19125427]
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000739 Anxiety 
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 HP:0000762 Decreased nerve conduction velocities 
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 HP:0000773 Short ribs 
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 HP:0000782 Abnormality of the scapulae "Any abnormality of the scapulae (shoulder blades)." [HPO:curators]
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 HP:0000894 Short clavicles 
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 HP:0000954 Transverse palmar creases "The presence of a single palmar crease (instead of the two palmar creases that are typically present)." [HPO:curators]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001182 Tapered fingers 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001270 Motor retardation 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001302 Pachygyria "A congenital abnormality of the cerebral hemisphere chacterized by unusually thick gyrations (convolutions) of the cerebral cortex." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001525 Severe failure to thrive 
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 HP:0001561 Polyhydramnios 
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 HP:0001622 Premature birth 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001636 Tetralogy of Fallot "A congenital cardiac malformation comprising pulmonary stenosis, overriding aorta, ventricular septum defect, and right ventricular hypertrophy. The diagnosis of TOF is made if at least three of the four above mentioned features are present." [HPO:curators]
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 HP:0001638 Cardiomyopathy 
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 HP:0001640 Cardiomegaly 
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 HP:0001770 Toe syndactyly "Webbing or fusion of the toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001789 Hydrops fetalis 
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001838 Vertical talus 
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 HP:0001840 Metatarsus varus "Metatarsus varus (adductus) is one of the most common foot deformities, that is defined as a transverse plane deformity in Lisfranc s (tarsometatarsal) joints in which the metatarsals are deviated medially. The relationship between talus and calcaneus is normal. On inspection the toes angle abruptly towards the midline, creating a C-shaped lateral foot border with a prominent styloid process of the 5th metatarsal. The result is that the forefoot is twisted inwards relative to the heel, so that the sole faces the midline." [HPO:curators]
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 HP:0001871 Hematological abnormality 
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 HP:0001920 Renal artery stenosis 
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 HP:0002017 Nausea and vomiting 
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 HP:0002021 Pyloric stenosis 
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 HP:0002092 Pulmonary hypertension 
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 HP:0002094 Dyspnea 
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 HP:0002119 Ventriculomegaly 
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 HP:0002126 Polymicrogyria "A congenital abnormality of the cerebral hemisphere characterized by an excessive number of small gyri (convolutions) on the surface of the brain." [HPO:curators]
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 HP:0002133 Status epilepticus 
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 HP:0002139 Arrhinencephaly 
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 HP:0002180 Neurodegeneration 
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 HP:0002209 Sparse scalp hair "Sparseness of the `head hair` (FMA:54241)." [HPO:probinson]
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 HP:0002359 Frequent falls 
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 HP:0002367 Visual hallucinations 
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002483 Bulbar signs 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002561 Absent nipples 
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 HP:0002692 Hypoplastic facial bones 
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 HP:0002696 Abnormality of the parietal bone "Any abnormality of the parietal bones of the skull." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002827 Dislocated hips 
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 HP:0002878 Early respiratory failure 
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 HP:0002936 Distal sensory impairment 
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 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003383 Onion bulb formations on nerve biopsy 
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 HP:0003394 Muscle cramps 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003447 Axonal loss 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0004993 slender long bones with narrow diaphyses 
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 HP:0005684 Distal arthrogryposis 
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 HP:0005793 Absent/hypoplastic distal phalanges of hands and feet 
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 HP:0005819 Abnormally short and broad middle phalanges 
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 HP:0005945 Laryngeal obstruction 
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 HP:0005989 Redundant neck skin 
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 HP:0006323 Premature deciduous tooth loss 
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 HP:0006466 Contractures of the ankles 
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 HP:0006628 Absent sternal ossification 
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 HP:0006660 Aplastic clavicles 
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 HP:0006709 Aplasia/Hypoplasia of the nipples 
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 HP:0006710 Aplasia/Hypoplasia of the clavicles "Absence or underdevelopment of the clavicles (collar bones)." [HPO:curators]
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 HP:0006713 Aplasia/Hypoplasia of the scapulae 
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 HP:0007182 Hypomyelination on nerve biopsy 
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 HP:0007333 Hypoplastic frontal lobes "Underdevelopment of the frontal lobe of the cerebrum." [HPO:sdoelken]
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0007633 Bilateral microphthalmos "A developmental anomaly characterized by abnormal smallness of both eyes." [HPO:curators]
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 HP:0008362 Aplasia/Hypoplasia of the hallux "Absence or underdevelopment of the big toe." [HPO:curators]
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 HP:0008386 Aplasia/Hypoplasia of the nails 
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 HP:0008665 Hypertrophic clitoris 
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 HP:0008897 Growth retardation, progressive 
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 HP:0008935 Hypotonia, neonatal, generalized 
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 HP:0009381 Hypoplastic/small fingers 
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 HP:0009777 Aplasia of the thumb "Absent thumb." [HPO:curators]
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 HP:0009835 Aplasia/Hypoplasia of the distal phalanges of the hand "Absence or underdevelopment of the distal phalanges." [HPO:curators]
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 HP:0009843 Aplasia/Hypoplasia of the middle phalanges of the hand 
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 HP:0009881 Aplasia of the distal phalanges of the hand 
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 HP:0010035 Aplasia of the 1st metacarpal "In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
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 HP:0010067 Aplasia/Hypoplasia of the 1st metatarsal 
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 HP:0010102 Aplasia of the distal phalanx of the hallux 
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 HP:0010107 Hypoplastic/small proximal phalanx of the hallux 
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 HP:0010537 Wide cranial sutures "An abnormally increased width of the cranial sutures." [HPO:curators]
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 HP:0010880 Increased nuchal translucency "The presence of an abnormally large hypoechoic space in the posterior fetal neck (usually detected on prenatal ultrasound examination)." [HPO:probinson, pmid:12751779]
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 HP:0011061 Abnormality of dental structure "An abnormality of the structure or composition of the teeth." [HPO:ibailleulforestier]
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 HP:0011309 Tapered toe "The gradual reduction in girth of the digit from proximal to distal." [pmid:19125433]
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 HP:0011344 Severe global developmental delay "A severe delay in the achievement of motor or mental milestones in the domains of development of a child." [DDD:hvfirth]
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 HP:0011451 Congenital microcephaly "Microcephaly (HP:0000252) that is present already at the time of birth." [HPO:probinson]
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 HP:0012294 Abnormality of the occipital bone "Abnormality of the `occipital bone` (FMA:52735) of the skull." [HPO:probinson]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012809 Narrow nasal base "Decreased distance between the attachments of the alae nasi to the face." [HPO:probinson, pmid:19152422]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0030816 Gingival recession "The loss of gum tissue. The result is that gum tissue is recessed and its position on the tooth is lowered, exposing the roots of the teeth." []
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 HP:0040111 Bilateral external ear deformity 
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 HP:0040163 Abnormal pelvis bone morphology 
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 HP:0045075 Sparse eyebrow "Decreased density/number of eyebrow hairs." [HPO:skoehler]
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 HP:0100817 Renovascular hypertension "The presence of `hypertension` (HP:0000822) related to stenosis of the `renal artery` (FMA:14751)." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000115020 Q9Y2I7 / PIKFYVE / phosphoinositide kinase, FYVE-type zinc finger containing  / complex
 ENSG00000103043 VAC14 / Q08AM6 / Vac14, PIKFYVE complex component  / complex






 

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