ENSG00000110719


Homo sapiens

Features
Gene ID: ENSG00000110719
  
Biological name :TCIRG1
  
Synonyms : Q13488 / T cell immune regulator 1, ATPase H+ transporting V0 subunit a3 / TCIRG1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: q13.2
Gene start: 68039016
Gene end: 68050895
  
Corresponding Affymetrix probe sets: 204158_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000431437
Ensembl peptide - ENSP00000436082
Ensembl peptide - ENSP00000435023
Ensembl peptide - ENSP00000434407
Ensembl peptide - ENSP00000432957
Ensembl peptide - ENSP00000432846
Ensembl peptide - ENSP00000265686
Ensembl peptide - ENSP00000431174
NCBI entrez gene - 10312     See in Manteia.
OMIM - 604592
RefSeq - XM_017017090
RefSeq - NM_006019
RefSeq - NM_006053
RefSeq - XM_005273709
RefSeq - XM_011544726
RefSeq - XM_017017089
RefSeq Peptide - NP_006010
RefSeq Peptide - NP_006044
swissprot - Q13488
swissprot - E9PM12
swissprot - A0A024R5E5
swissprot - E9PMC5
swissprot - H0YCE3
swissprot - Q8TCH1
swissprot - H0YEL3
swissprot - E9PNA6
Ensembl - ENSG00000110719
  
Related genetic diseases (OMIM): 259700 - Osteopetrosis, autosomal recessive 1, 259700
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcirg1aENSDARG00000016835Danio rerio
 tcirg1bENSDARG00000105142Danio rerio
 TCIRG1ENSGALG00000036069Gallus gallus
 Tcirg1ENSMUSG00000001750Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9Y487 / ATP6V0A2 / ATPase H+ transporting V0 subunit a2ENSG0000018534451
Q9HBG4 / ATP6V0A4 / ATPase H+ transporting V0 subunit a4ENSG0000010592948
Q93050 / ATP6V0A1 / ATPase H+ transporting V0 subunit a1ENSG0000003362747


Protein motifs (from Interpro)
Interpro ID Name
 IPR002490  V-type ATPase, V0 complex, 116kDa subunit family
 IPR026028  ATPase, V0 complex, subunit 116kDa, eukaryotic


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006968 cellular defense response TAS
 biological_processGO:0007035 vacuolar acidification IBA
 biological_processGO:0007039 protein catabolic process in the vacuole ISS
 biological_processGO:0008284 positive regulation of cell proliferation TAS
 biological_processGO:0008286 insulin receptor signaling pathway TAS
 biological_processGO:0015986 ATP synthesis coupled proton transport IBA
 biological_processGO:0015991 ATP hydrolysis coupled proton transport IEA
 biological_processGO:0016236 macroautophagy ISS
 biological_processGO:0033572 transferrin transport TAS
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0070072 vacuolar proton-transporting V-type ATPase complex assembly IBA
 biological_processGO:0090383 phagosome acidification TAS
 biological_processGO:1902600 proton transmembrane transport TAS
 cellular_componentGO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005765 lysosomal membrane HDA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IDA
 cellular_componentGO:0016471 vacuolar proton-transporting V-type ATPase complex IBA
 cellular_componentGO:0030670 phagocytic vesicle membrane TAS
 cellular_componentGO:0033179 proton-transporting V-type ATPase, V0 domain IEA
 cellular_componentGO:0101003 ficolin-1-rich granule membrane TAS
 molecular_functionGO:0005215 transporter activity TAS
 molecular_functionGO:0015078 proton transmembrane transporter activity IEA
 molecular_functionGO:0046961 proton-transporting ATPase activity, rotational mechanism IBA
 molecular_functionGO:0051117 ATPase binding IBA


Pathways (from Reactome)
Pathway description
ROS, RNS production in phagocytes
Neutrophil degranulation
Insulin receptor recycling
Transferrin endocytosis and recycling
Ion channel transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000238 Hydrocephalus 
Show

 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
Show

 HP:0000365 Hearing loss 
Show

 HP:0000388 Otitis media 
Show

 HP:0000505 Impaired vision 
Show

 HP:0000597 Ophthalmoparesis "Ophthalmoplegia is a paralysis or weakness of one or more of the muscles that control eye movement." [HPO:curators]
Show

 HP:0000618 Blindness 
Show

 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
Show

 HP:0000648 Optic atrophy 
Show

 HP:0000649 Abnormality of vision evoked potentials 
Show

 HP:0000670 Carious teeth 
Show

 HP:0000684 Delayed dentition "Delayed eruption of teeth." [HPO:curators]
Show

 HP:0000772 Abnormality of the ribs 
Show

 HP:0000774 Narrow chest 
Show

 HP:0000944 Abnormality of the metaphyses 
Show

 HP:0000978 Ecchymoses 
Show

 HP:0000980 Pallor 
Show

 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
Show

 HP:0001281 Tetany 
Show

 HP:0001337 Tremor "An unintentional, oscillating to-and-fro muscle movement." [HPO:curators]
Show

 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001510 Growth retardation 
Show

 HP:0001641 Abnormality of the pulmonary valve "An abnormality of the `pulmonary valve` (FMA:7246)." [HPO:probinson]
Show

 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
Show

 HP:0001876 Pancytopenia 
Show

 HP:0001903 Anemia 
Show

 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
Show

 HP:0002148 Hypophosphatemia "A lower than normal level of blood phosphate." [HPO:curators]
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
Show

 HP:0002257 Chronic rhinitis 
Show

 HP:0002653 Bone pain 
Show

 HP:0002716 Lymphadenopathy 
Show

 HP:0002754 Osteomyelitis 
Show

 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
Show

 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
Show

 HP:0002812 Coxa vara 
Show

 HP:0002901 Hypocalcemia "A level of blood calcium that is lower than normal." [HPO:curators]
Show

 HP:0003015 Metaphyseal flaring "The presence of splayed (i.e.,flared) metaphyseal segments of the long bones." [HPO:curators]
Show

 HP:0003155 Elevated alkaline phosphatase "Abnormally increased serum levels of `alkaline phosphatase activity` (GO:0004035)." [HPO:probinson]
Show

 HP:0004349 Reduced bone mineral density "A reduction of bone mineral density, that is, of the amount of matter per cubic centimeter of bones." [HPO:curators]
Show

 HP:0004370 Abnormality of temperature regulation 
Show

 HP:0004415 Pulmonary artery stenosis 
Show

 HP:0004618 Sandwich appearance of vertebral bodies 
Show

 HP:0005930 Abnormality of the epiphyses 
Show

 HP:0006323 Premature deciduous tooth loss 
Show

 HP:0006487 Bowing of the long bones 
Show

 HP:0006824 Cranial nerve paralysis 
Show

 HP:0007209 Facial paralysis due to cranial nerve VII compression "Facial nerve paralysis (facial palsy) caused by compression (with ensuing loss of function) of the facial nerve (i.e., the seventh cranial nerve)." [HPO:curators]
Show

 HP:0007807 Optic nerve compression 
Show

 HP:0008066 Abnormal blistering of the skin 
Show

 HP:0010543 Opsoclonus "Spontaneous, non-rhythmic, multi-directional, chaotic movements of the eyes, giving the appearance of agitation. There may be bursts of conjugate movement of the eyes in varying directions and of varying amplitude." [HPO:curators]
Show

 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
Show

 HP:0010719 Abnormality of hair texture "An abnormality of the texture of the `hair` (FMA:53667)." [HPO:probinson]
Show

 HP:0011002 Osteopetrosis 
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000033627 Q93050 / ATP6V0A1 / ATPase H+ transporting V0 subunit a1  / complex
 ENSG00000185344 Q9Y487 / ATP6V0A2 / ATPase H+ transporting V0 subunit a2  / complex
 ENSG00000105929 Q9HBG4 / ATP6V0A4 / ATPase H+ transporting V0 subunit a4  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr