ENSG00000111319


Homo sapiens

Features
Gene ID: ENSG00000111319
  
Biological name :SCNN1A
  
Synonyms : P37088 / SCNN1A / sodium channel epithelial 1 alpha subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 12
Strand: -1
Band: p13.31
Gene start: 6346843
Gene end: 6377730
  
Corresponding Affymetrix probe sets: 203453_at (Human Genome U133 Plus 2.0 Array)   215026_x_at (Human Genome U133 Plus 2.0 Array)   217264_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000443434
Ensembl peptide - ENSP00000345028
Ensembl peptide - ENSP00000228916
Ensembl peptide - ENSP00000438739
Ensembl peptide - ENSP00000440876
Ensembl peptide - ENSP00000353292
Ensembl peptide - ENSP00000380166
NCBI entrez gene - 6337     See in Manteia.
OMIM - 600228
RefSeq - NM_001159575
RefSeq - NM_001038
RefSeq - NM_001159576
RefSeq Peptide - NP_001029
RefSeq Peptide - NP_001153048
RefSeq Peptide - NP_001153047
swissprot - P37088
swissprot - C5HTZ1
swissprot - F5GXE6
swissprot - F5H5F8
swissprot - J3KPV6
Ensembl - ENSG00000111319
  
Related genetic diseases (OMIM): 264350 - Pseudohypoaldosteronism, type I, 264350
  613021 - Bronchiectasis with or without elevated sweat chloride 2, 613021
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCNN1AENSGALG00000040424Gallus gallus
 Scnn1aENSMUSG00000030340Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P51172 / SCNN1D / sodium channel epithelial 1 delta subunitENSG0000016257235
P51170 / SCNN1G / sodium channel epithelial 1 gamma subunitENSG0000016682828
P51168 / SCNN1B / sodium channel epithelial 1 beta subunitENSG0000016844726
ASIC4 / Q96FT7 / acid sensing ion channel subunit family member 4ENSG0000007218218
ASIC3 / Q9UHC3 / acid sensing ion channel subunit 3ENSG0000021319917
ASIC1 / P78348 / acid sensing ion channel subunit 1ENSG0000011088117
ASIC2 / Q16515 / acid sensing ion channel subunit 2ENSG0000010868416
ASIC5 / Q9NY37 / acid sensing ion channel subunit family member 5ENSG0000025639414


Protein motifs (from Interpro)
Interpro ID Name
 IPR001873  Epithelial sodium channel
 IPR004724  Epithelial sodium channel, chordates
 IPR020903  Epithelial sodium channel, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0034220 ion transmembrane transport TAS
 biological_processGO:0035725 sodium ion transmembrane transport IEA
 biological_processGO:0050891 multicellular organismal water homeostasis IDA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0050909 sensory perception of taste IEA
 biological_processGO:0055078 sodium ion homeostasis IDA
 cellular_componentGO:0001669 acrosomal vesicle ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005887 integral component of plasma membrane IDA
 cellular_componentGO:0005929 cilium IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0031514 motile cilium IDA
 cellular_componentGO:0034706 sodium channel complex IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0060170 ciliary membrane IDA
 cellular_componentGO:0070062 extracellular exosome IDA
 cellular_componentGO:0097228 sperm principal piece ISS
 molecular_functionGO:0005272 sodium channel activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0015280 ligand-gated sodium channel activity IDA
 molecular_functionGO:0050699 WW domain binding IPI


Pathways (from Reactome)
Pathway description
Stimuli-sensing channels


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000127 Renal salt wasting 
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 HP:0000841 Hyperactive renin-angiotensin system 
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 HP:0000859 Increased plasma aldosterone 
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 HP:0001508 Failure to thrive 
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 HP:0001942 Metabolic acidosis 
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 HP:0001944 Dehydration 
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 HP:0002013 Vomiting 
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 HP:0002014 Diarrhea 
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 HP:0002110 Bronchiectasis 
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 HP:0002153 Hyperkalemia 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002615 Hypotension 
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 HP:0002902 Hyponatremia 
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 HP:0003593 Early onset 
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 HP:0004469 Chronic bronchitis 
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 HP:0008242 Pseudohypoaldosteronism 
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 HP:0008872 Feeding problems in infancy 
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 HP:0012236 Elevated sweat chloride "An increased concentration of chloride in the sweat." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000168447 P51168 / SCNN1B / sodium channel epithelial 1 beta subunit  / complex
 ENSG00000166828 P51170 / SCNN1G / sodium channel epithelial 1 gamma subunit  / complex






 

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