ENSG00000113966


Homo sapiens

Features
Gene ID: ENSG00000113966
  
Biological name :ARL6
  
Synonyms : ADP ribosylation factor like GTPase 6 / ARL6 / Q9H0F7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q11.2
Gene start: 97764521
Gene end: 97801242
  
Corresponding Affymetrix probe sets: 223735_at (Human Genome U133 Plus 2.0 Array)   235320_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419619
Ensembl peptide - ENSP00000418740
Ensembl peptide - ENSP00000419934
Ensembl peptide - ENSP00000488530
Ensembl peptide - ENSP00000337722
Ensembl peptide - ENSP00000377756
Ensembl peptide - ENSP00000418057
NCBI entrez gene - 84100     See in Manteia.
OMIM - 608845
RefSeq - XM_017007313
RefSeq - NM_001278293
RefSeq - NM_001323513
RefSeq - NM_032146
RefSeq - NM_177976
RefSeq - XM_006713783
RefSeq - XM_017007311
RefSeq - XM_017007312
RefSeq Peptide - NP_001265222
RefSeq Peptide - NP_115522
RefSeq Peptide - NP_816931
RefSeq Peptide - NP_001310442
swissprot - A0A0J9YXT0
swissprot - C9IZ13
swissprot - H7C5H6
swissprot - Q9H0F7
Ensembl - ENSG00000113966
  
Related genetic diseases (OMIM): 209900 - {Bardet-Biedl syndrome 1, modifier of}, 209900
  600151 - Bardet-Biedl syndrome 3, 600151
  613575 - ?Retinitis pigmentosa 55, 613575
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arl6ENSDARG00000032056Danio rerio
 ARL6ENSGALG00000019215Gallus gallus
 Arl6ENSMUSG00000022722Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ARL1 / P40616 / ADP ribosylation factor like GTPase 1ENSG0000012080538
ARL5A / Q9Y689 / ADP ribosylation factor like GTPase 5AENSG0000016298037
ARL5B / Q96KC2 / ADP ribosylation factor like GTPase 5BENSG0000016599737
ARL5C / A6NH57 / ADP ribosylation factor like GTPase 5CENSG0000014174834


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006612 protein targeting to membrane ISS
 biological_processGO:0007368 determination of left/right symmetry ISS
 biological_processGO:0007420 brain development IEA
 biological_processGO:0007601 visual perception IEA
 biological_processGO:0008589 regulation of smoothened signaling pathway IEA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016055 Wnt signaling pathway IMP
 biological_processGO:0030030 cell projection organization IEA
 biological_processGO:0032402 melanosome transport ISS
 biological_processGO:0045444 fat cell differentiation IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0051258 protein polymerization ISS
 biological_processGO:0060271 cilium assembly ISS
 biological_processGO:0061512 protein localization to cilium IMP
 biological_processGO:0097499 protein localization to non-motile cilium IEA
 biological_processGO:1903445 protein transport from ciliary membrane to plasma membrane IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0005879 axonemal microtubule ISS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005929 cilium IDA
 cellular_componentGO:0005930 axoneme ISS
 cellular_componentGO:0016020 membrane ISS
 cellular_componentGO:0030117 membrane coat ISS
 cellular_componentGO:0034464 BBSome ISS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0005543 phospholipid binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
BBSome-mediated cargo-targeting to cilium


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000035 Abnormality of the testis 
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 HP:0000089 Renal hypoplasia 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000405 Hearing loss, conductive 
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000470 Short neck 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000501 Glaucoma "Glaucoma refers loss of retinal ganglion cells in a characteristic pattern of optic neuropathy usually associated with increased intraocular pressure." [HPO:curators]
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 HP:0000510 Retinitis pigmentosa "Hereditary degeneration and atrophy of the retina." [HPO:curators]
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000563 Keratoconus "A cone-shaped deformity of the cornea." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000618 Blindness 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000662 Night blindness 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000842 Hyperinsulinemia 
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 HP:0000987 Scarring 
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 HP:0001133 Constricted visual fields 
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 HP:0001156 Brachydactyly 
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001395 Hepatic fibrosis 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002167 Neurological speech impairment 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003241 Genital hypoplasia 
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 HP:0003828 Variable expressivity 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005180 Tricuspid insufficiency 
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0007675 Progressive night blindness 
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 HP:0007703 Abnormal retinal pigmentation 
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 HP:0008046 Abnormality of the retinal vasculature 
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 HP:0008724 Hypoplastic ovary 
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 HP:0008736 Hypoplasia of penis 
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 HP:0010442 Polydactyly 
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 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000278195 SSTR3 / P32745 / somatostatin receptor 3  / reaction / complex






 

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