ENSG00000117385


Homo sapiens

Features
Gene ID: ENSG00000117385
  
Biological name :P3H1
  
Synonyms : P3H1 / prolyl 3-hydroxylase 1 / Q32P28
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p34.2
Gene start: 42746335
Gene end: 42767084
  
Corresponding Affymetrix probe sets: 220750_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000236040
Ensembl peptide - ENSP00000361604
Ensembl peptide - ENSP00000380245
Ensembl peptide - ENSP00000408056
Ensembl peptide - ENSP00000296388
NCBI entrez gene - 64175     See in Manteia.
OMIM - 610339
RefSeq - XM_017002052
RefSeq - NM_001146289
RefSeq - NM_001243246
RefSeq - NM_022356
RefSeq - XM_005271110
RefSeq - XM_011541948
RefSeq - XM_017002051
RefSeq Peptide - NP_071751
RefSeq Peptide - NP_001139761
RefSeq Peptide - NP_001230175
swissprot - H7C2W6
swissprot - Q32P28
swissprot - E2QRI1
Ensembl - ENSG00000117385
  
Related genetic diseases (OMIM): 610915 - Osteogenesis imperfecta, type VIII, 610915
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 p3h1ENSDARG00000071212Danio rerio
 P3H1ENSGALG00000004833Gallus gallus
 P3h1ENSMUSG00000028641Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P3H2 / Q8IVL5 / prolyl 3-hydroxylase 2ENSG0000009053042
P3H3 / Q8IVL6 / prolyl 3-hydroxylase 3ENSG0000011081138
CRTAP / O75718 / cartilage associated proteinENSG0000017027517
P3H4 / Q92791 / prolyl 3-hydroxylase family member 4 (non-enzymatic)ENSG0000014169617


Protein motifs (from Interpro)
Interpro ID Name
 IPR005123  Oxoglutarate/iron-dependent dioxygenase
 IPR006620  Prolyl 4-hydroxylase, alpha subunit
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006457 protein folding IMP
 biological_processGO:0008285 negative regulation of cell proliferation NAS
 biological_processGO:0010976 positive regulation of neuron projection development ISS
 biological_processGO:0018126 protein hydroxylation IMP
 biological_processGO:0019511 peptidyl-proline hydroxylation IEA
 biological_processGO:0032963 collagen metabolic process IBA
 biological_processGO:0050708 regulation of protein secretion IMP
 biological_processGO:0050821 protein stabilization IMP
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0060348 bone development IMP
 biological_processGO:0061077 chaperone-mediated protein folding ISS
 biological_processGO:1901874 negative regulation of post-translational protein modification IMP
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0032991 protein-containing complex ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0005506 iron ion binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0005518 collagen binding ISS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
 molecular_functionGO:0019797 procollagen-proline 3-dioxygenase activity IBA
 molecular_functionGO:0031418 L-ascorbic acid binding IEA
 molecular_functionGO:0044877 protein-containing complex binding ISS
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051213 dioxygenase activity IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000260 Wide anterior fontanel "Enlargement of the anterior fontanelle with respect to age-dependent norms." [HPO:curators]
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 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000520 Proptosis 
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 HP:0000883 Thin ribs 
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 HP:0000926 Platyspondyly 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001552 Barrel-shaped chest 
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 HP:0002645 Wormian bones 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002757 Recurrent fractures "The repeated occurence of bone fractures (implying an abnormally increased tendency for fracture)." [HPO:curators]
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 HP:0002808 Kyphosis 
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 HP:0002953 Vertebral compression fractures 
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 HP:0002980 Femoral bowing "Bowing (abnormal curvature) of the femur." [HPO:curators]
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 HP:0002982 Tibial bowing "A developmental defect with posteromedial tibial angulation." [HPO:curators]
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 HP:0002986 Radial bowing 
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 HP:0003100 Thin long bones 
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 HP:0003783 Externally rotated/abducted legs 
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 HP:0003784 Type 1 collagen overmodification 
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 HP:0004331 Decreased skull ossification "A reduction in the magnitude or amount of ossification of the skull." [HPO:curators]
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 HP:0005855 Multiple prenatal fractures "The presence of bone fractures in the prenatal period that are diagnosed at birth or before." [HPO:curators]
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0010049 Hypoplastic/short metacarpal bones 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000166794 PPIB / P23284 / peptidylprolyl isomerase B  / complex
 ENSG00000170275 CRTAP / O75718 / cartilage associated protein  / complex






 

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