ENSG00000119401


Homo sapiens

Features
Gene ID: ENSG00000119401
  
Biological name :TRIM32
  
Synonyms : Q13049 / TRIM32 / tripartite motif containing 32
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: 1
Band: q33.1
Gene start: 116687302
Gene end: 116701300
  
Corresponding Affymetrix probe sets: 203846_at (Human Genome U133 Plus 2.0 Array)   236233_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000412603
Ensembl peptide - ENSP00000363095
Ensembl peptide - ENSP00000408292
NCBI entrez gene - 22954     See in Manteia.
OMIM - 602290
RefSeq - XM_017014486
RefSeq - NM_001099679
RefSeq - NM_012210
RefSeq - XM_005251813
RefSeq - XM_011518398
RefSeq Peptide - NP_001093149
RefSeq Peptide - NP_036342
swissprot - Q13049
swissprot - Q5JVY0
swissprot - A0A024R843
Ensembl - ENSG00000119401
  
Related genetic diseases (OMIM): 254110 - Muscular dystrophy, limb-girdle, type 2H, 254110
  615988 - ?Bardet-Biedl syndrome 11, 615988
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM32ENSGALG00000034426Gallus gallus
 Q8CH72ENSMUSG00000051675Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
NHLRC4 / P0CG21 / NHL repeat containing 4ENSG000002571087


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001841  Zinc finger, RING-type
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IDA
 biological_processGO:0001894 tissue homeostasis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IMP
 biological_processGO:0007014 actin ubiquitination IEA
 biological_processGO:0009411 response to UV ISS
 biological_processGO:0016567 protein ubiquitination IDA
 biological_processGO:0030307 positive regulation of cell growth IDA
 biological_processGO:0030335 positive regulation of cell migration IDA
 biological_processGO:0032479 regulation of type I interferon production TAS
 biological_processGO:0032897 negative regulation of viral transcription IDA
 biological_processGO:0034612 response to tumor necrosis factor ISS
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IDA
 biological_processGO:0045087 innate immune response TAS
 biological_processGO:0045444 fat cell differentiation ISS
 biological_processGO:0045666 positive regulation of neuron differentiation ISS
 biological_processGO:0045732 positive regulation of protein catabolic process ISS
 biological_processGO:0045787 positive regulation of cell cycle IDA
 biological_processGO:0045862 positive regulation of proteolysis IDA
 biological_processGO:0046716 muscle cell cellular homeostasis IEA
 biological_processGO:0048147 negative regulation of fibroblast proliferation ISS
 biological_processGO:0050769 positive regulation of neurogenesis ISS
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IDA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity ISS
 biological_processGO:0051155 positive regulation of striated muscle cell differentiation IEA
 biological_processGO:0061564 axon development IEA
 biological_processGO:1902187 negative regulation of viral release from host cell IDA
 biological_processGO:1902230 negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage IDA
 biological_processGO:1903265 positive regulation of tumor necrosis factor-mediated signaling pathway IEA
 biological_processGO:1903883 positive regulation of interleukin-17-mediated signaling pathway IEA
 biological_processGO:1903886 positive regulation of chemokine (C-C motif) ligand 20 production IEA
 biological_processGO:2000147 positive regulation of cell motility ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005863 striated muscle myosin thick filament ISS
 molecular_functionGO:0003713 transcription coactivator activity TAS
 molecular_functionGO:0003723 RNA binding ISS
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0017022 myosin binding ISS
 molecular_functionGO:0030957 Tat protein binding TAS
 molecular_functionGO:0031369 translation initiation factor binding ISS
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043130 ubiquitin binding IDA
 molecular_functionGO:0043621 protein self-association IDA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IDA


Pathways (from Reactome)
Pathway description
Regulation of innate immune responses to cytosolic DNA
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000003 Multicystic kidney "Multicystic dysplasia of the kidney is characterized by multiple cysts of varying size in the kidney and the absence of a normal pelvocaliceal system. The condition is associated with ureteral or ureteropelvic atresia, and the affected kidney is nonfunctional." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000135 Hypogonadism "Reduced function of the gonads (testes in males or ovaries in females)." [HPO:curators]
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 HP:0000298 Mask-like facies 
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 HP:0000365 Hearing loss 
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 HP:0000368 Low-set, posteriorly rotated ears 
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 HP:0000426 Prominent nasal bridge 
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 HP:0000470 Short neck 
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 HP:0000488 Retinopathy 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0001162 Postaxial polydactyly (hands) "Supernumerary digits located at the ulnar side of the hand." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001265 Hyporeflexia 
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 HP:0001284 Areflexia 
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 HP:0001395 Hepatic fibrosis 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0002167 Neurological speech impairment 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002515 Waddling gait 
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003560 Muscular dystrophy "The term dystrophy means abnormal growth. However, muscular dystrophy is used to describe primary myopathies with a genetic basis and a progressive course characterized by progressive skeletal muscle weakness, defects in muscle proteins, and the apoptosis of muscle cells." [HPO:curators]
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 HP:0003677 Slow progression 
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 HP:0003687 Centralized nuclei 
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 HP:0003707 Calf muscle pseudohypertrophy 
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 HP:0003722 Neck flexor weakness "Weakness of the muscles involved in neck flexion (sternocleidomastoid, longus capitus, longus colli, and scalenus anterior)." [HPO:curators]
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0003731 Quadriceps muscle weakness "Weakness of the quadriceps muscle (that is, of the muscle fasciculus of quadriceps femoris)." [HPO:curators]
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 HP:0003738 Exercise-induced myalgia "The occurrence of an unusually high amount of muscle pain following exercise." [HPO:curators]
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 HP:0003749 Pelvic girdle muscle weakness "Weakness of the muscles of the pelvic girdle (also known as the hip girdle), that is, lack of strength of the muscles around the pelvis." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0006101 Finger syndactyly "Webbing or fusion of the fingers, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0008724 Hypoplastic ovary 
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 HP:0008736 Hypoplasia of penis 
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 HP:0008988 Pelvic girdle muscle atrophy "Muscular atrophy affecting the muscles that attach to the pelvic girdle (the gluteal muscles, the lateral rotators, adductor magnus, adductor brevis, adductor longus, pectineus, and gracilis muscles)." [HPO:curators]
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 HP:0008994 Proximal muscle weakness in lower limbs "A lack of strength of the proximal muscles of the legs." [HPO:curators]
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 HP:0010442 Polydactyly 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0010747 Medial flaring of the eyebrow "An abnormal distribution of eyebrow hair growth in the medial direction." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000184584 Q86WV6 / TMEM173 / transmembrane protein 173  / complex / reaction






 

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