ENSG00000184584


Homo sapiens

Features
Gene ID: ENSG00000184584
  
Biological name :TMEM173
  
Synonyms : Q86WV6 / TMEM173 / transmembrane protein 173
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.2
Gene start: 139475534
Gene end: 139482935
  
Corresponding Affymetrix probe sets: 224916_at (Human Genome U133 Plus 2.0 Array)   224929_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000331288
Ensembl peptide - ENSP00000427455
NCBI entrez gene - 340061     See in Manteia.
OMIM - 612374
RefSeq - XM_011537640
RefSeq - NM_001301738
RefSeq - NM_198282
RefSeq - XM_005268445
RefSeq - XM_011537639
RefSeq Peptide - NP_001288667
RefSeq Peptide - NP_938023
swissprot - Q86WV6
swissprot - J3QTB1
Ensembl - ENSG00000184584
  
Related genetic diseases (OMIM): 615934 - STING-associated vasculopathy, infantile-onset, 615934
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tmem173ENSDARG00000091058Danio rerio
 TMEM173ENSGALG00000041129Gallus gallus
 Q3TBT3ENSMUSG00000024349Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR029158  Stimulator of interferon genes protein
 IPR033952  Stimulator of interferon genes protein, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002218 activation of innate immune response IEA
 biological_processGO:0002230 positive regulation of defense response to virus by host IMP
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0032092 positive regulation of protein binding IDA
 biological_processGO:0032479 regulation of type I interferon production TAS
 biological_processGO:0032481 positive regulation of type I interferon production IEA
 biological_processGO:0032608 interferon-beta production IMP
 biological_processGO:0033160 positive regulation of protein import into nucleus, translocation IDA
 biological_processGO:0035458 cellular response to interferon-beta IEA
 biological_processGO:0042993 obsolete positive regulation of transcription factor import into nucleus IDA
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045087 innate immune response IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051607 defense response to virus IEA
 biological_processGO:0071360 cellular response to exogenous dsRNA IMP
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005741 mitochondrial outer membrane IDA
 cellular_componentGO:0005777 peroxisome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane TAS
 cellular_componentGO:0030667 secretory granule membrane TAS
 cellular_componentGO:0048471 perinuclear region of cytoplasm ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008134 transcription factor binding IDA
 molecular_functionGO:0019901 protein kinase binding IDA
 molecular_functionGO:0031625 ubiquitin protein ligase binding IEA
 molecular_functionGO:0035438 cyclic-di-GMP binding IDA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA
 molecular_functionGO:0061507 cyclic-GMP-AMP binding IEA


Pathways (from Reactome)
Pathway description
STING mediated induction of host immune responses
Regulation of innate immune responses to cytosolic DNA
STAT6-mediated induction of chemokines
IRF3-mediated induction of type I IFN
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000965 Cutis marmorata 
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 HP:0001009 Telangiectasia "Telangiectasias refer to small dilated blood vessels located near the surface of the skin or mucous membranes, measuring between 0.5 and 1 millimeter in diameter." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001510 Growth retardation 
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 HP:0001882 Leukopenia 
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 HP:0001894 Thrombocytosis 
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 HP:0001903 Anemia 
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 HP:0001945 Fever 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002729 Lymph nodes show florid reactive follicular hyperplasia and marked paracortical expansion with immunoblasts and plasma cells 
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 HP:0002829 Arthralgia 
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 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
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 HP:0003565 Elevated erythrocyte sedimentation rate 
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 HP:0003623 Onset in neonatal period 
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 HP:0003828 Variable expressivity 
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 HP:0006530 Interstitial pulmonary disease 
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 HP:0008404 Nail dystrophy, variable 
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 HP:0010702 Increased immunoglobulin level "An abnormally increased level of immunoglobulin in blood." [HPO:probinson]
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 HP:0010783 Erythema "Redness of the skin, caused by hyperemia of the capillaries in the lower layers of the skin." [HPO:probinson]
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 HP:0025300 Malar rash "An erythematous (red), flat facial rash that affects the skin in the maler area (over the cheekbones) and extends over thebridge of the nose." []
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 HP:0030880 Raynaud phenomenon 
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 HP:0100614 Myositis "A general term for inflammation of the muscles without respect to the underlying cause." [HPO:sdoelken]
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 HP:0200039 skin pustule "A small elevation of the skin containing cloudy or purulent material usually consisting of necrotic inflammatory cells." [HPO:SKOEHLER]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000126456 IRF3 / Q14653 / interferon regulatory factor 3  / reaction / complex
 ENSG00000169871 Q9BRZ2 / TRIM56 / tripartite motif containing 56  / reaction / complex
 ENSG00000183735 TBK1 / Q9UHD2 / TANK binding kinase 1  / reaction / complex
 ENSG00000184584 Q86WV6 / TMEM173 / transmembrane protein 173  / complex / reaction
 ENSG00000166888 STAT6 / P42226 / signal transducer and activator of transcription 6  / reaction / complex
 ENSG00000110042 DTX4 / Q9Y2E6 / deltex E3 ubiquitin ligase 4  / reaction / complex
 ENSG00000160505 NLRP4 / Q96MN2 / NLR family pyrin domain containing 4  / reaction / complex
 ENSG00000119401 Q13049 / TRIM32 / tripartite motif containing 32  / complex / reaction






 

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