ENSG00000169871


Homo sapiens

Features
Gene ID: ENSG00000169871
  
Biological name :TRIM56
  
Synonyms : Q9BRZ2 / TRIM56 / tripartite motif containing 56
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: q22.1
Gene start: 101085439
Gene end: 101097967
  
Corresponding Affymetrix probe sets: 214808_at (Human Genome U133 Plus 2.0 Array)   226040_at (Human Genome U133 Plus 2.0 Array)   231876_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000305161
Ensembl peptide - ENSP00000486217
Ensembl peptide - ENSP00000404186
NCBI entrez gene - 81844     See in Manteia.
OMIM - 616996
RefSeq - NM_030961
RefSeq - XM_011516589
RefSeq Peptide - NP_112223
swissprot - C9JI91
swissprot - A0A0D9SF19
swissprot - Q9BRZ2
Ensembl - ENSG00000169871
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Trim56ENSMUSG00000043279Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9H8W5 / TRIM45 / tripartite motif containing 45ENSG0000013425319
TRIM3 / O75382 / tripartite motif containing 3ENSG0000011017117
TRIM2 / Q9C040 / tripartite motif containing 2ENSG0000010965417
Q2Q1W2 / TRIM71 / tripartite motif containing 71ENSG0000020655716
O15164 / TRIM24 / tripartite motif containing 24ENSG0000012277914
Q9UPN9 / TRIM33 / tripartite motif containing 33ENSG0000019732314
O15016 / TRIM66 / tripartite motif containing 66ENSG0000016643614
Q13263 / TRIM28 / tripartite motif containing 28ENSG0000013072613


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0032479 regulation of type I interferon production TAS
 biological_processGO:0032608 interferon-beta production ISS
 biological_processGO:0034340 response to type I interferon ISS
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0051607 defense response to virus ISS
 biological_processGO:0070534 protein K63-linked ubiquitination ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity TAS
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of innate immune responses to cytosolic DNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000184584 Q86WV6 / TMEM173 / transmembrane protein 173  / complex / reaction






 

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