ENSG00000109654


Homo sapiens

Features
Gene ID: ENSG00000109654
  
Biological name :TRIM2
  
Synonyms : Q9C040 / TRIM2 / tripartite motif containing 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: 1
Band: q31.3
Gene start: 153152342
Gene end: 153339320
  
Corresponding Affymetrix probe sets: 202341_s_at (Human Genome U133 Plus 2.0 Array)   202342_s_at (Human Genome U133 Plus 2.0 Array)   214248_s_at (Human Genome U133 Plus 2.0 Array)   214249_at (Human Genome U133 Plus 2.0 Array)   215945_s_at (Human Genome U133 Plus 2.0 Array)   243945_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000400879
Ensembl peptide - ENSP00000400375
Ensembl peptide - ENSP00000415812
Ensembl peptide - ENSP00000488751
Ensembl peptide - ENSP00000488602
Ensembl peptide - ENSP00000488229
Ensembl peptide - ENSP00000487836
Ensembl peptide - ENSP00000487750
Ensembl peptide - ENSP00000339659
NCBI entrez gene - 23321     See in Manteia.
OMIM - 614141
RefSeq - XM_017007955
RefSeq - XM_011531796
RefSeq - XM_011531798
RefSeq - XM_017007943
RefSeq - XM_017007944
RefSeq - XM_017007945
RefSeq - XM_017007946
RefSeq - XM_017007947
RefSeq - XM_017007948
RefSeq - XM_017007949
RefSeq - XM_017007950
RefSeq - XM_017007951
RefSeq - XM_017007952
RefSeq - XM_017007953
RefSeq - XM_017007954
RefSeq - NM_001130067
RefSeq - NM_001302694
RefSeq - NM_001351054
RefSeq - NM_001351055
RefSeq - NM_001351056
RefSeq - NM_001351057
RefSeq - NM_015271
RefSeq - XM_006714157
RefSeq - XM_006714158
RefSeq - XM_006714159
RefSeq - XM_006714160
RefSeq - XM_006714161
RefSeq - XM_006714162
RefSeq - XM_006714165
RefSeq - XM_011531794
RefSeq - XM_011531795
RefSeq Peptide - NP_001289623
RefSeq Peptide - NP_001337983
RefSeq Peptide - NP_001337984
RefSeq Peptide - NP_001337985
RefSeq Peptide - NP_001337986
RefSeq Peptide - NP_056086
RefSeq Peptide - NP_001123539
swissprot - Q9C040
swissprot - C9J084
swissprot - A0A0J9YY97
swissprot - A0A0J9YXY2
swissprot - A0A0J9YX34
swissprot - A0A0J9YW70
swissprot - C9JVI3
Ensembl - ENSG00000109654
  
Related genetic diseases (OMIM): 615490 - Charcot-Marie-Tooth disease, type 2R, 615490
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim2aENSDARG00000031817Danio rerio
 trim2bENSDARG00000076174Danio rerio
 TRIM2ENSGALG00000009207Gallus gallus
 Trim2ENSMUSG00000027993Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM3 / O75382 / tripartite motif containing 3ENSG0000011017165
Q2Q1W2 / TRIM71 / tripartite motif containing 71ENSG0000020655729
Q9H8W5 / TRIM45 / tripartite motif containing 45ENSG0000013425318
Q9UPN9 / TRIM33 / tripartite motif containing 33ENSG0000019732317
Q9BRZ2 / TRIM56 / tripartite motif containing 56ENSG0000016987117
O15164 / TRIM24 / tripartite motif containing 24ENSG0000012277916
O15016 / TRIM66 / tripartite motif containing 66ENSG0000016643615
Q13263 / TRIM28 / tripartite motif containing 28ENSG0000013072614


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0043523 regulation of neuron apoptotic process ISS
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity ISS
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Interferon gamma signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001605 Vocal cord paralysis 
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 HP:0001761 Pes cavus 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002136 Broad-based gait "An abnormal gait pattern in which persons stand and walk with their feet spaced widely apart. This is often a component of cerebellar ataxia." [HPO:curators]
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 HP:0002779 Tracheomalacia 
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 HP:0003199 Decreased muscle mass 
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 HP:0003380 Decreased number of myelinated fibers "A loss of myelinated nerve fibers (in general, this finding can be observed on nerve biopsy)." [HPO:curators]
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 HP:0003477 Axonal neuropathy 
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 HP:0006380 Knee flexion deformities 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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