ENSGALG00000009207


Gallus gallus

Features
Gene ID: ENSGALG00000009207
  
Biological name :TRIM2
  
Synonyms : TRIM2 / tripartite motif containing 2
  
Possible biological names infered from orthology : Q9C040 / Q9ESN6
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 19996054
Gene end: 20033183
  
Corresponding Affymetrix probe sets: Gga.11205.1.S1_s_at (Chicken Array)   Gga.2814.1.S1_at (Chicken Array)   GgaAffx.22833.1.S1_at (Chicken Array)   GgaAffx.22833.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014974
NCBI entrez gene - 100857562     See in Manteia.
RefSeq - XM_015285272
RefSeq - NM_001257314
RefSeq - XM_015285270
RefSeq - XM_015285271
RefSeq - XM_015285264
RefSeq - XM_015285265
RefSeq - XM_015285266
RefSeq - XM_015285267
RefSeq - XM_015285268
RefSeq - XM_015285269
RefSeq Peptide - NP_001244243
swissprot - F1NEW3
Ensembl - ENSGALG00000009207
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trim2aENSDARG00000031817Danio rerio
 trim2bENSDARG00000076174Danio rerio
 TRIM2ENSG00000109654Homo sapiens
 Trim2ENSMUSG00000027993Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM3 / tripartite motif containing 3 / O75382* / Q9R1R2*ENSGALG0000003400470
TRIM71 / E3 ubiquitin-protein ligase TRIM71 / Q1PSW8* / Q2Q1W2* / tripartite motif containing 71*ENSGALG0000001962230
TRIM33 / tripartite motif containing 33 / Q9UPN9*ENSGALG0000000197617
TRIM66 / tripartite motif containing 66 / O15016* / Q924W6*ENSGALG0000000595815
TRIM24 / tripartite motif containing 24 / O15164* / Q64127* / Transcription intermediary factor 1-alpha *ENSGALG0000001282315
TRIM45 / tripartite motif containing 45 / Q6PFY8* / Q9H8W5* / Tripartite motif-containing protein 45 *ENSGALG0000001481813


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001258  NHL repeat
 IPR001298  Filamin/ABP280 repeat
 IPR001841  Zinc finger, RING-type
 IPR003649  B-box, C-terminal
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013017  NHL repeat, subgroup
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013783  Immunoglobulin-like fold
 IPR014756  Immunoglobulin E-set
 IPR017868  Filamin/ABP280 repeat-like
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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